Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   VR617_RS15440 Genome accession   NZ_CP142783
Coordinates   3189486..3190223 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain SX12     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3184486..3195223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR617_RS15425 (VR617_15475) clpC 3184940..3187513 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  VR617_RS15430 (VR617_15480) yfiH 3187643..3188374 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  VR617_RS15435 (VR617_15485) rluD 3188371..3189351 (-) 981 WP_258149052.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VR617_RS15440 (VR617_15490) comL 3189486..3190223 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  VR617_RS15445 (VR617_15495) raiA 3190494..3190835 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  VR617_RS15450 (VR617_15500) pheL 3190939..3190986 (+) 48 WP_010723158.1 phe operon leader peptide -
  VR617_RS15455 (VR617_15505) pheA 3191085..3192245 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  VR617_RS15460 (VR617_15510) tyrA 3192288..3193409 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  VR617_RS15465 (VR617_15515) aroF 3193420..3194490 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  VR617_RS15470 (VR617_15520) yfiL 3194700..3195065 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=842003 VR617_RS15440 WP_000197686.1 3189486..3190223(+) (comL) [Escherichia coli strain SX12]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=842003 VR617_RS15440 WP_000197686.1 3189486..3190223(+) (comL) [Escherichia coli strain SX12]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376