Detailed information NTG0841976

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QQX48_RS04360
• Genome accession: NZ_CP127123
• Coordinates: 923611..924483 (-)
• Length: 290 a.a.
• NCBI ID: WP_023084740.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain Ned_5_Control
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 918611..929483

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQX48_RS04315 (QQX48_04315)	-	919472..919642 (-)	171	WP_003094672.1	DUF3094 family protein	-
QQX48_RS04320 (QQX48_04320)	-	919668..920117 (-)	450	WP_180361163.1	MOSC domain-containing protein	-
QQX48_RS04325 (QQX48_04325)	-	920114..920743 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
QQX48_RS04330 (QQX48_04330)	-	920876..921301 (+)	426	WP_003116252.1	GNAT family N-acetyltransferase	-
QQX48_RS04335 (QQX48_04335)	-	921298..921768 (+)	471	WP_003094664.1	hypothetical protein	-
QQX48_RS04340 (QQX48_04340)	-	921765..922454 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
QQX48_RS04345 (QQX48_04345)	-	922560..922769 (+)	210	WP_003094660.1	hypothetical protein	-
QQX48_RS04350 (QQX48_04350)	yacG	922806..923006 (-)	201	WP_019486072.1	DNA gyrase inhibitor YacG	-
QQX48_RS04355 (QQX48_04355)	coaE	923003..923614 (-)	612	WP_003112838.1	dephospho-CoA kinase	-
QQX48_RS04360 (QQX48_04360)	pilD	923611..924483 (-)	873	WP_023084740.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
QQX48_RS04365 (QQX48_04365)	pilC	924484..925701 (-)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
QQX48_RS04370 (QQX48_04370)	pilB	925705..927405 (-)	1701	WP_003107297.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QQX48_RS04375 (QQX48_04375)	-	927636..928100 (+)	465	WP_031643283.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31843.88 Da
• Isoelectric Point: 7.7068

>NTDB_id=841976 QQX48_RS04360 WP_023084740.1 923611..924483(-) (pilD) [Pseudomonas aeruginosa strain Ned_5_Control]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=841976 QQX48_RS04360 WP_023084740.1 923611..924483(-) (pilD) [Pseudomonas aeruginosa strain Ned_5_Control]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATACTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472