Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | QQX49_RS23665 | Genome accession | NZ_CP127121 |
| Coordinates | 5088811..5089683 (+) | Length | 290 a.a. |
| NCBI ID | WP_017148550.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain USA_2_Control | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5083811..5094683
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQX49_RS23645 (QQX49_23625) | tfpZ | 5084319..5085056 (-) | 738 | WP_023110409.1 | TfpX/TfpZ family type IV pilin accessory protein | - |
| QQX49_RS23650 (QQX49_23630) | pilE | 5085121..5085657 (-) | 537 | WP_025921208.1 | pilin | Machinery gene |
| QQX49_RS23655 (QQX49_23635) | pilB | 5085884..5087587 (+) | 1704 | WP_023100230.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| QQX49_RS23660 (QQX49_23640) | pilC | 5087591..5088808 (+) | 1218 | WP_023103506.1 | type II secretion system F family protein | Machinery gene |
| QQX49_RS23665 (QQX49_23645) | pilD | 5088811..5089683 (+) | 873 | WP_017148550.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| QQX49_RS23670 (QQX49_23650) | coaE | 5089680..5090291 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| QQX49_RS23675 (QQX49_23655) | yacG | 5090288..5090488 (+) | 201 | WP_017148551.1 | DNA gyrase inhibitor YacG | - |
| QQX49_RS23680 (QQX49_23660) | - | 5090525..5090734 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| QQX49_RS23685 (QQX49_23665) | - | 5090840..5091529 (-) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| QQX49_RS23690 (QQX49_23670) | - | 5091526..5091996 (-) | 471 | WP_023103507.1 | hypothetical protein | - |
| QQX49_RS23695 (QQX49_23675) | - | 5091993..5092418 (-) | 426 | WP_016562341.1 | GNAT family N-acetyltransferase | - |
| QQX49_RS23700 (QQX49_23680) | - | 5092551..5093180 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| QQX49_RS23705 (QQX49_23685) | - | 5093177..5093626 (+) | 450 | WP_003161439.1 | MOSC domain-containing protein | - |
| QQX49_RS23710 (QQX49_23690) | - | 5093652..5093822 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31888.88 Da Isoelectric Point: 7.7068
>NTDB_id=841921 QQX49_RS23665 WP_017148550.1 5088811..5089683(+) (pilD) [Pseudomonas aeruginosa strain USA_2_Control]
MQLTDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MQLTDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=841921 QQX49_RS23665 WP_017148550.1 5088811..5089683(+) (pilD) [Pseudomonas aeruginosa strain USA_2_Control]
ATGCAACTCACAGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCAACTCACAGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.357 |
96.552 |
0.534 |
| pilD | Vibrio campbellii strain DS40M4 |
53.791 |
95.517 |
0.514 |
| pilD | Acinetobacter nosocomialis M2 |
51.071 |
96.552 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
51.071 |
96.552 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.571 |
96.552 |
0.469 |