Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | QN085_RS03385 | Genome accession | NZ_CP127114 |
| Coordinates | 731075..731941 (-) | Length | 288 a.a. |
| NCBI ID | WP_031324244.1 | Uniprot ID | A0A0B5K5Y3 |
| Organism | Pseudomonas sp. M2(2023) | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 726075..736941
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QN085_RS03350 (QN085_03350) | - | 726522..727817 (-) | 1296 | WP_003260618.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| QN085_RS03355 (QN085_03355) | - | 727902..728075 (-) | 174 | WP_013970765.1 | DUF3094 family protein | - |
| QN085_RS03360 (QN085_03360) | - | 728209..728838 (-) | 630 | WP_013970766.1 | DUF1780 domain-containing protein | - |
| QN085_RS03365 (QN085_03365) | - | 728894..729325 (-) | 432 | WP_041506273.1 | hypothetical protein | - |
| QN085_RS03370 (QN085_03370) | - | 729412..730119 (+) | 708 | WP_031324242.1 | energy-coupling factor ABC transporter permease | - |
| QN085_RS03375 (QN085_03375) | yacG | 730255..730455 (-) | 201 | WP_003260624.1 | DNA gyrase inhibitor YacG | - |
| QN085_RS03380 (QN085_03380) | coaE | 730452..731075 (-) | 624 | WP_023660627.1 | dephospho-CoA kinase | - |
| QN085_RS03385 (QN085_03385) | pilD | 731075..731941 (-) | 867 | WP_031324244.1 | A24 family peptidase | Machinery gene |
| QN085_RS03390 (QN085_03390) | - | 731944..733152 (-) | 1209 | WP_023660629.1 | type II secretion system F family protein | - |
| QN085_RS03395 (QN085_03395) | - | 733367..733777 (+) | 411 | WP_023660630.1 | pilin | - |
| QN085_RS03405 (QN085_03405) | - | 734086..735375 (+) | 1290 | WP_099452832.1 | integrase arm-type DNA-binding domain-containing protein | - |
| QN085_RS25825 | - | 735701..735910 (+) | 210 | WP_225874453.1 | pyocin activator PrtN family protein | - |
| QN085_RS03410 (QN085_03410) | - | 736151..736414 (+) | 264 | WP_225874454.1 | AlpA family phage regulatory protein | - |
| QN085_RS03415 (QN085_03415) | - | 736411..736746 (+) | 336 | WP_274094706.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 288 a.a. Molecular weight: 32162.39 Da Isoelectric Point: 8.2288
>NTDB_id=841843 QN085_RS03385 WP_031324244.1 731075..731941(-) (pilD) [Pseudomonas sp. M2(2023)]
MTLWTLLAEQPAYFLTLATVLGLLVGSFLNVLVYRLPIMLERQWQREAQEMLELPITRHERFDLWLPASRCPHCAHRIRA
WENIPVISYLVLRGRCSACKTRISPRYPLVELASALLSLVVAWRFGASPEALLALPLTWCLLALSLIDAEHQLLPDALVL
PMLWLGLIVNAFGLYIPLTSALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGT
LAGLCLLRLRRHAMGTAIPFGPYLAIAGWIAVLWGDEIYASYTNLLGF
MTLWTLLAEQPAYFLTLATVLGLLVGSFLNVLVYRLPIMLERQWQREAQEMLELPITRHERFDLWLPASRCPHCAHRIRA
WENIPVISYLVLRGRCSACKTRISPRYPLVELASALLSLVVAWRFGASPEALLALPLTWCLLALSLIDAEHQLLPDALVL
PMLWLGLIVNAFGLYIPLTSALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGT
LAGLCLLRLRRHAMGTAIPFGPYLAIAGWIAVLWGDEIYASYTNLLGF
Nucleotide
Download Length: 867 bp
>NTDB_id=841843 QN085_RS03385 WP_031324244.1 731075..731941(-) (pilD) [Pseudomonas sp. M2(2023)]
ATGACTTTATGGACTTTGCTGGCTGAGCAGCCGGCGTACTTTCTCACCCTGGCCACGGTGCTCGGCCTGCTGGTGGGCAG
CTTTCTCAATGTGCTGGTGTACCGCCTGCCTATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAGGAAATGCTGGAGT
TGCCGATCACGCGGCACGAGCGTTTCGACCTGTGGCTACCCGCCTCGCGCTGCCCGCATTGTGCGCATCGGATTCGCGCA
TGGGAGAACATTCCGGTCATCAGCTACCTGGTCCTGCGCGGGCGTTGTTCAGCCTGCAAAACCCGCATCAGCCCGCGCTA
CCCATTGGTGGAGTTAGCCAGCGCGCTGCTGTCGCTGGTGGTGGCCTGGCGCTTTGGTGCTTCGCCCGAGGCCTTGCTGG
CGCTGCCGCTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGCGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAATGCCTTCGGCCTCTACATTCCGCTGACCAGCGCACTGTGGGGCGCGGTGGC
CGGGTACCTTAGCCTTTGGACGGTGTACTGGGTGTTCAAGCTGGTTACCGGCAAGGAGGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGTTGACCCTGCTGCTGTCATCGGTGGTCGGGACG
CTGGCTGGGCTGTGCCTGTTGCGCTTGCGCCGGCATGCGATGGGCACGGCGATCCCGTTTGGCCCCTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACACAAACCTGCTTGGATTCTGA
ATGACTTTATGGACTTTGCTGGCTGAGCAGCCGGCGTACTTTCTCACCCTGGCCACGGTGCTCGGCCTGCTGGTGGGCAG
CTTTCTCAATGTGCTGGTGTACCGCCTGCCTATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAGGAAATGCTGGAGT
TGCCGATCACGCGGCACGAGCGTTTCGACCTGTGGCTACCCGCCTCGCGCTGCCCGCATTGTGCGCATCGGATTCGCGCA
TGGGAGAACATTCCGGTCATCAGCTACCTGGTCCTGCGCGGGCGTTGTTCAGCCTGCAAAACCCGCATCAGCCCGCGCTA
CCCATTGGTGGAGTTAGCCAGCGCGCTGCTGTCGCTGGTGGTGGCCTGGCGCTTTGGTGCTTCGCCCGAGGCCTTGCTGG
CGCTGCCGCTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGCGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAATGCCTTCGGCCTCTACATTCCGCTGACCAGCGCACTGTGGGGCGCGGTGGC
CGGGTACCTTAGCCTTTGGACGGTGTACTGGGTGTTCAAGCTGGTTACCGGCAAGGAGGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGTTGACCCTGCTGCTGTCATCGGTGGTCGGGACG
CTGGCTGGGCTGTGCCTGTTGCGCTTGCGCCGGCATGCGATGGGCACGGCGATCCCGTTTGGCCCCTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACACAAACCTGCTTGGATTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.818 |
95.486 |
0.514 |
| pilD | Acinetobacter baumannii D1279779 |
52.5 |
97.222 |
0.51 |
| pilD | Acinetobacter nosocomialis M2 |
51.786 |
97.222 |
0.503 |
| pilD | Vibrio campbellii strain DS40M4 |
49.822 |
97.569 |
0.486 |
| pilD | Neisseria gonorrhoeae MS11 |
50.558 |
93.403 |
0.472 |