Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QQO14_RS04460 Genome accession   NZ_CP127096
Coordinates   902961..903359 (+) Length   132 a.a.
NCBI ID   WP_285491349.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain M1691_10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 897961..908359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQO14_RS04430 atpD 898237..899649 (+) 1413 WP_011275243.1 F0F1 ATP synthase subunit beta -
  QQO14_RS04435 - 899670..900071 (+) 402 WP_285491343.1 F0F1 ATP synthase subunit epsilon -
  QQO14_RS04440 - 900199..900432 (+) 234 WP_285491345.1 DUF1146 family protein -
  QQO14_RS04445 murA 900537..901802 (+) 1266 WP_285491347.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QQO14_RS04450 fabZ 901842..902279 (+) 438 WP_016931213.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QQO14_RS04455 - 902330..902773 (-) 444 WP_011275248.1 YwpF-like family protein -
  QQO14_RS04460 ssb 902961..903359 (+) 399 WP_285491349.1 single-stranded DNA-binding protein Machinery gene
  QQO14_RS04465 - 903697..904404 (+) 708 WP_285491351.1 transglycosylase family protein -
  QQO14_RS04470 tenA 904693..905382 (+) 690 WP_285491353.1 thiaminase II -
  QQO14_RS04475 thiD 905375..906196 (+) 822 WP_285491355.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QQO14_RS04480 thiM 906189..906980 (+) 792 WP_285491724.1 hydroxyethylthiazole kinase -
  QQO14_RS04485 thiE 906982..907620 (+) 639 WP_285491357.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15154.09 Da        Isoelectric Point: 4.9684

>NTDB_id=841733 QQO14_RS04460 WP_285491349.1 902961..903359(+) (ssb) [Staphylococcus haemolyticus strain M1691_10]
MLNKIVIVGRLTKKAQIFENEEVKIATFCVATERNYKDENNEIACDYIFCKAFGKTATNIESYTDQGTLVGITGQMRSRK
YDKNGQTHFVTELYVETIKFMSPKSKNDNILPNTSYDEDAYSFDHLEVIDIN

Nucleotide


Download         Length: 399 bp        

>NTDB_id=841733 QQO14_RS04460 WP_285491349.1 902961..903359(+) (ssb) [Staphylococcus haemolyticus strain M1691_10]
ATGCTAAATAAAATTGTGATAGTAGGTCGATTGACCAAAAAGGCACAAATATTTGAAAACGAGGAGGTGAAGATAGCTAC
GTTCTGTGTTGCAACTGAACGTAATTATAAAGATGAAAATAATGAAATAGCTTGTGATTATATTTTTTGTAAGGCATTTG
GTAAAACAGCAACAAATATAGAATCATATACAGACCAAGGCACTTTAGTTGGTATTACAGGACAAATGAGATCTCGTAAG
TACGATAAAAATGGCCAAACGCATTTTGTGACTGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATCTAAAAA
CGATAATATTCTTCCTAACACCTCATATGATGAAGACGCTTATTCCTTTGATCACCTTGAAGTGATTGATATTAACTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

75.573

99.242

0.75
  ssb Staphylococcus aureus MW2

74.809

99.242

0.742