Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QMC72_RS21290 Genome accession   NZ_CP127095
Coordinates   4171102..4171392 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus inaquosorum strain LBA001     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4166102..4176392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS21275 (QMC72_21275) - 4166298..4167611 (-) 1314 WP_148983331.1 ubiquitin-like domain-containing protein -
  QMC72_RS21280 (QMC72_21280) - 4167767..4168534 (-) 768 WP_084993276.1 TatD family hydrolase -
  QMC72_RS21285 (QMC72_21285) metG 4168613..4170607 (-) 1995 WP_148983329.1 methionine--tRNA ligase -
  QMC72_RS21290 (QMC72_21290) abrB 4171102..4171392 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  QMC72_RS21295 (QMC72_21295) rsmI 4171441..4172319 (-) 879 WP_060397762.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QMC72_RS21300 (QMC72_21300) - 4172294..4172593 (-) 300 WP_003242154.1 GIY-YIG nuclease family protein -
  QMC72_RS21305 (QMC72_21305) - 4172580..4173323 (-) 744 WP_133489374.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QMC72_RS21310 (QMC72_21310) yabA 4173382..4173741 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  QMC72_RS21315 (QMC72_21315) ricT 4173756..4174583 (-) 828 WP_060397760.1 competence/sporulation regulator complex protein RicT -
  QMC72_RS21320 (QMC72_21320) holB 4174586..4175575 (-) 990 WP_133489376.1 DNA polymerase III subunit delta' -
  QMC72_RS21325 (QMC72_21325) - 4175587..4176027 (-) 441 WP_003242162.1 YaaR family protein -
  QMC72_RS21330 (QMC72_21330) darA 4176040..4176369 (-) 330 WP_003218295.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=841722 QMC72_RS21290 WP_003226760.1 4171102..4171392(+) (abrB) [Bacillus inaquosorum strain LBA001]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=841722 QMC72_RS21290 WP_003226760.1 4171102..4171392(+) (abrB) [Bacillus inaquosorum strain LBA001]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAATTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATTATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1