Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   VVK16_RS10905 Genome accession   NZ_CP142708
Coordinates   1114927..1115664 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain T28R     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1109927..1120664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVK16_RS10875 (VVK16_10865) yfiL 1110085..1110450 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  VVK16_RS10880 (VVK16_10870) aroF 1110660..1111730 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  VVK16_RS10885 (VVK16_10875) tyrA 1111741..1112862 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  VVK16_RS10890 (VVK16_10880) pheA 1112905..1114065 (-) 1161 WP_000200099.1 bifunctional chorismate mutase/prephenate dehydratase -
  VVK16_RS10895 (VVK16_10885) pheL 1114164..1114211 (-) 48 WP_010723158.1 phe operon leader peptide -
  VVK16_RS10900 (VVK16_10890) raiA 1114315..1114656 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  VVK16_RS10905 (VVK16_10895) comL 1114927..1115664 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  VVK16_RS10910 (VVK16_10900) rluD 1115799..1116779 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VVK16_RS10915 (VVK16_10905) yfiH 1116776..1117507 (+) 732 WP_001752929.1 purine nucleoside phosphorylase YfiH -
  VVK16_RS10920 (VVK16_10910) clpC 1117637..1120210 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=841722 VVK16_RS10905 WP_000197686.1 1114927..1115664(-) (comL) [Escherichia coli strain T28R]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=841722 VVK16_RS10905 WP_000197686.1 1114927..1115664(-) (comL) [Escherichia coli strain T28R]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376