Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   QMC72_RS13560 Genome accession   NZ_CP127095
Coordinates   2628977..2629375 (+) Length   132 a.a.
NCBI ID   WP_284107096.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain LBA001     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2623977..2634375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS13535 (QMC72_13535) hxlR 2624701..2625063 (-) 363 WP_003241118.1 transcriptional activator HxlR -
  QMC72_RS13540 (QMC72_13540) hxlA 2625295..2625927 (+) 633 WP_060397902.1 3-hexulose-6-phosphate synthase -
  QMC72_RS13545 (QMC72_13545) hxlB 2625933..2626490 (+) 558 WP_225516474.1 6-phospho-3-hexuloisomerase -
  QMC72_RS13550 (QMC72_13550) tlpC 2626602..2628326 (+) 1725 WP_284107094.1 methyl-accepting chemotaxis protein TlpC -
  QMC72_RS13555 (QMC72_13555) nucA/comI 2628501..2628950 (+) 450 WP_284107095.1 DNA-entry nuclease Machinery gene
  QMC72_RS13560 (QMC72_13560) nin/comJ 2628977..2629375 (+) 399 WP_284107096.1 DNA-entry nuclease inhibitor Regulator
  QMC72_RS13565 (QMC72_13565) bglC 2629412..2630845 (-) 1434 WP_225516478.1 6-phospho-beta-glucosidase -
  QMC72_RS13570 (QMC72_13570) - 2630917..2631645 (-) 729 WP_232918926.1 AAA family ATPase -
  QMC72_RS13575 (QMC72_13575) - 2631665..2632006 (-) 342 WP_284107097.1 DUF3147 family protein -
  QMC72_RS13580 (QMC72_13580) - 2632000..2632416 (-) 417 WP_232919008.1 MarR family transcriptional regulator -
  QMC72_RS13585 (QMC72_13585) - 2632533..2632865 (-) 333 WP_003241133.1 YckD family protein -
  QMC72_RS13590 (QMC72_13590) - 2632948..2633403 (-) 456 WP_003241134.1 RDD family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14887.84 Da        Isoelectric Point: 4.7424

>NTDB_id=841694 QMC72_RS13560 WP_284107096.1 2628977..2629375(+) (nin/comJ) [Bacillus inaquosorum strain LBA001]
MIKSWKPQELSISYHQLTVFQKDSAPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIEIESIMSKRLSFDLPKGDYQLTCWTVPAEKSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=841694 QMC72_RS13560 WP_284107096.1 2628977..2629375(+) (nin/comJ) [Bacillus inaquosorum strain LBA001]
TTGATCAAGTCATGGAAGCCGCAAGAACTGTCGATTTCATATCATCAACTTACTGTATTTCAAAAGGATTCCGCACCTCC
TGTCATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCGGACGGAGCAATTTCCTTTGAGGCTCAGAGAA
ATACAAAGGCATTTATTCTTTTGCGCCTTAACAGTTCAGAAACTGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTGAGATTGAAAGCATTATGTCTAAAAGGCTGTCCTTTGATCTTCCTAAAGGGGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAGAAGTCAGATCTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

96.212

100

0.962