Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QMC72_RS13555 Genome accession   NZ_CP127095
Coordinates   2628501..2628950 (+) Length   149 a.a.
NCBI ID   WP_284107095.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain LBA001     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2623501..2633950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS13535 (QMC72_13535) hxlR 2624701..2625063 (-) 363 WP_003241118.1 transcriptional activator HxlR -
  QMC72_RS13540 (QMC72_13540) hxlA 2625295..2625927 (+) 633 WP_060397902.1 3-hexulose-6-phosphate synthase -
  QMC72_RS13545 (QMC72_13545) hxlB 2625933..2626490 (+) 558 WP_225516474.1 6-phospho-3-hexuloisomerase -
  QMC72_RS13550 (QMC72_13550) tlpC 2626602..2628326 (+) 1725 WP_284107094.1 methyl-accepting chemotaxis protein TlpC -
  QMC72_RS13555 (QMC72_13555) nucA/comI 2628501..2628950 (+) 450 WP_284107095.1 DNA-entry nuclease Machinery gene
  QMC72_RS13560 (QMC72_13560) nin/comJ 2628977..2629375 (+) 399 WP_284107096.1 DNA-entry nuclease inhibitor Regulator
  QMC72_RS13565 (QMC72_13565) bglC 2629412..2630845 (-) 1434 WP_225516478.1 6-phospho-beta-glucosidase -
  QMC72_RS13570 (QMC72_13570) - 2630917..2631645 (-) 729 WP_232918926.1 AAA family ATPase -
  QMC72_RS13575 (QMC72_13575) - 2631665..2632006 (-) 342 WP_284107097.1 DUF3147 family protein -
  QMC72_RS13580 (QMC72_13580) - 2632000..2632416 (-) 417 WP_232919008.1 MarR family transcriptional regulator -
  QMC72_RS13585 (QMC72_13585) - 2632533..2632865 (-) 333 WP_003241133.1 YckD family protein -
  QMC72_RS13590 (QMC72_13590) - 2632948..2633403 (-) 456 WP_003241134.1 RDD family protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16468.47 Da        Isoelectric Point: 4.4943

>NTDB_id=841693 QMC72_RS13555 WP_284107095.1 2628501..2628950(+) (nucA/comI) [Bacillus inaquosorum strain LBA001]
MNITMDIIKTILLVIVVIAAAAVSLIKGDFFSADQKTSQTKQYDETIAFPSDRYPETAKHIKDAINEGHSDVCTIDRDGA
EERREQSLKDIPPKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=841693 QMC72_RS13555 WP_284107095.1 2628501..2628950(+) (nucA/comI) [Bacillus inaquosorum strain LBA001]
GTGAACATCACGATGGACATCATAAAAACGATACTTCTCGTCATTGTCGTCATAGCAGCTGCAGCTGTCAGCCTGATAAA
GGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAACAATATGACGAAACAATCGCCTTCCCTTCTGACCGTT
ATCCCGAAACGGCAAAACATATAAAGGATGCGATAAATGAGGGACACTCAGATGTGTGCACCATCGACAGGGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAAGACATACCACCTAAAACGGGGTATGACAGAGATGAATGGCCAATGGCTATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATATATTTCTCCCGCTGACAACCGCGGTGCAGGTTCTTGGGTCGGGCATC
AGCTTACCGATTACCCTGACGGCACAAAGGTTTTATTCACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

93.289

100

0.933