Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QMC72_RS03390 Genome accession   NZ_CP127095
Coordinates   628510..629313 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain LBA001     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 623510..634313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS03370 (QMC72_03370) - 623621..624466 (+) 846 WP_084993749.1 TlyA family RNA methyltransferase -
  QMC72_RS03375 (QMC72_03375) argR 624564..625013 (+) 450 WP_003236889.1 arginine repressor ArgR -
  QMC72_RS03380 (QMC72_03380) recN 625049..626779 (+) 1731 WP_232919702.1 DNA repair protein RecN Machinery gene
  QMC72_RS03385 (QMC72_03385) spoIVB 626954..628234 (+) 1281 WP_284107343.1 SpoIVB peptidase -
  QMC72_RS03390 (QMC72_03390) spo0A 628510..629313 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  QMC72_RS03395 (QMC72_03395) - 629455..629634 (+) 180 WP_003236884.1 hypothetical protein -
  QMC72_RS03400 (QMC72_03400) - 629674..629808 (+) 135 WP_003236881.1 hypothetical protein -
  QMC72_RS03405 (QMC72_03405) - 629869..630987 (-) 1119 WP_268276393.1 NADH-dependent flavin oxidoreductase -
  QMC72_RS03410 (QMC72_03410) - 631060..631224 (-) 165 WP_284107360.1 hypothetical protein -
  QMC72_RS03415 (QMC72_03415) - 631522..631818 (+) 297 WP_133487334.1 hypothetical protein -
  QMC72_RS03420 (QMC72_03420) - 631838..632458 (+) 621 WP_232919703.1 N-acetylmuramoyl-L-alanine amidase -
  QMC72_RS03425 (QMC72_03425) - 632537..633268 (+) 732 WP_232919704.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=841668 QMC72_RS03390 WP_003226427.1 628510..629313(+) (spo0A) [Bacillus inaquosorum strain LBA001]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=841668 QMC72_RS03390 WP_003226427.1 628510..629313(+) (spo0A) [Bacillus inaquosorum strain LBA001]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGTGTAGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTGGATATTATTATGCCGCATTTGGACGGACTTGCGGTTTTAGAGCGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGACATATCCGTCAGGTCAGCGGAAATGCCAGCAGCGTGACGCACCGTGCGC
CATCATCGCAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAAAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCGGCGCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCGTGGAGCAGAGGAAACATTGACTCCATTTCCTCATTATTCGGCTATACAGTC
AGCATGACAAAAGCTAAACCGACAAATTCAGAGTTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1