Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QMC72_RS03380 Genome accession   NZ_CP127095
Coordinates   625049..626779 (+) Length   576 a.a.
NCBI ID   WP_232919702.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain LBA001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 620049..631779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS03355 (QMC72_03355) - 620408..620662 (+) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -
  QMC72_RS03360 (QMC72_03360) - 620652..621542 (+) 891 WP_003236893.1 polyprenyl synthetase family protein -
  QMC72_RS03365 (QMC72_03365) dxs 621723..623624 (+) 1902 WP_100274413.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QMC72_RS03370 (QMC72_03370) - 623621..624466 (+) 846 WP_084993749.1 TlyA family RNA methyltransferase -
  QMC72_RS03375 (QMC72_03375) argR 624564..625013 (+) 450 WP_003236889.1 arginine repressor ArgR -
  QMC72_RS03380 (QMC72_03380) recN 625049..626779 (+) 1731 WP_232919702.1 DNA repair protein RecN Machinery gene
  QMC72_RS03385 (QMC72_03385) spoIVB 626954..628234 (+) 1281 WP_284107343.1 SpoIVB peptidase -
  QMC72_RS03390 (QMC72_03390) spo0A 628510..629313 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  QMC72_RS03395 (QMC72_03395) - 629455..629634 (+) 180 WP_003236884.1 hypothetical protein -
  QMC72_RS03400 (QMC72_03400) - 629674..629808 (+) 135 WP_003236881.1 hypothetical protein -
  QMC72_RS03405 (QMC72_03405) - 629869..630987 (-) 1119 WP_268276393.1 NADH-dependent flavin oxidoreductase -
  QMC72_RS03410 (QMC72_03410) - 631060..631224 (-) 165 WP_284107360.1 hypothetical protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64570.38 Da        Isoelectric Point: 4.7400

>NTDB_id=841667 QMC72_RS03380 WP_232919702.1 625049..626779(+) (recN) [Bacillus inaquosorum strain LBA001]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLDVC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYQRYMKLLKKLKHLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNYIETRLNEIKQLKRKYGASV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKAWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPIVNGQLVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTHVKPLSKQEKVVEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=841667 QMC72_RS03380 WP_232919702.1 625049..626779(+) (recN) [Bacillus inaquosorum strain LBA001]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGATTTCTTTTGAACGCGGGCTCACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCTTCTGAAT
TTGTCAGATATGGAGAAGCAAAAGCCGAGCTTGAAGGGCTGTTTCTGTTGGAGAGCGGCCATCCCGTTTTAGATGTATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTTATGAGAAGGGATATCAGCACGAGTGGAAAAAGCGTTTGCCG
GGTTAATGGCAAGCTTGTCACGATTGCCTCGTTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGAGCCGAAGTGGAAAGCGCGCTCCAA
GCGTATCAGGAAGGATACCAGCGTTACATGAAGCTGCTTAAAAAACTAAAACATCTTTCTGAAAGCGAACAGGAAATGGC
CCACCGCCTTGATCTCATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTTGAGCTTAATGAAGATGAACAGCTCC
AAGAAGAACGCCAGCAAATTTCAAACTTTGAGAAGATATATGAATCGCTGCAAAATGCGTATAACGCGCTTCGCAGTGAG
CAAGGCGGACTGGACTGGGTCGGAATGGCATCAGCGCAGCTTGAAGATATATCCGATATTAATGAACCACTGAAAAAACT
GTCTGAAAGTGTTTCGAACTCCTACTATCTTCTGGAGGACGCTACATTTCAGATGAGAAATATGCTGGACGAGCTTGAGT
ATGATCCGGAACGCCTGAATTATATTGAAACACGTCTTAATGAAATCAAACAGCTGAAACGAAAATATGGTGCATCTGTT
GAGGACATTTTAGAATACGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCACCTTCAAAGCTT
GAAGAAGGAGCTTGACTCAGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTTTCACAAATCAGGAAAGCATGGGCGA
AAAAGCTGGCCGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAGTCAACGTTTGATACGGAATTTAAGGTC
AGAACAGCGTCCCGCAATGAGGAGGCGCCGATTGTAAACGGCCAGCTTGTTCAGCTGACTGAACAAGGGATAGATCTGGT
GAAGTTTTTAATTTCAACCAATACAGGTGAACCGCTAAAATCTCTTTCGAAAGTCGCTTCCGGGGGAGAGTTGTCTCGGG
TAATGCTTGCCATAAAAAGCATTTTTTCCTCTCAGCAGGATGTGACGTCGATTATATTCGATGAGGTCGATACCGGTGTA
AGCGGCAGAGTCGCCCAGGCAATCGCTGAGAAGATCCATAAAGTGTCAATAGGATCACAAGTGCTGTGTATTACACACTT
GCCTCAGGTGGCTGCCATGGCCGATACGCACCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACATGTCA
AGCCGCTGTCTAAGCAGGAAAAGGTAGTGGAAATCGGGCGCATGATTGCAGGAGTCGAAGTAACAGACTTGACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

97.569

100

0.976