Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   VR550_RS05745 Genome accession   NZ_CP142677
Coordinates   1179358..1180095 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain FG92-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1174358..1185095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR550_RS05715 (VR550_05700) - 1174561..1174881 (-) 321 WP_407345893.1 DUF2799 domain-containing protein -
  VR550_RS05720 (VR550_05705) aroF 1175091..1176161 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  VR550_RS05725 (VR550_05710) tyrA 1176172..1177293 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  VR550_RS05730 (VR550_05715) pheA 1177336..1178496 (-) 1161 WP_000200099.1 bifunctional chorismate mutase/prephenate dehydratase -
  VR550_RS05735 (VR550_05720) pheL 1178595..1178642 (-) 48 WP_010723158.1 phe operon leader peptide -
  VR550_RS05740 (VR550_05725) raiA 1178746..1179087 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  VR550_RS05745 (VR550_05730) comL 1179358..1180095 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  VR550_RS05750 (VR550_05735) rluD 1180230..1181210 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VR550_RS05755 (VR550_05740) yfiH 1181207..1181938 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  VR550_RS05760 (VR550_05745) clpC 1182068..1184641 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=841563 VR550_RS05745 WP_000197686.1 1179358..1180095(-) (comL) [Escherichia coli strain FG92-1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=841563 VR550_RS05745 WP_000197686.1 1179358..1180095(-) (comL) [Escherichia coli strain FG92-1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376