Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QQW97_RS18320 Genome accession   NZ_CP127089
Coordinates   3438781..3439503 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis strain KK026     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3433781..3444503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQW97_RS18285 (QQW97_18270) fliW 3433920..3434351 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  QQW97_RS18290 (QQW97_18275) yviE 3434372..3434947 (-) 576 WP_003243053.1 DUF6470 family protein -
  QQW97_RS18295 (QQW97_18280) flgL 3434994..3435890 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  QQW97_RS18300 (QQW97_18285) flgK 3435901..3437424 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  QQW97_RS18305 (QQW97_18290) flgN 3437443..3437925 (-) 483 WP_003227999.1 flagellar protein FlgN -
  QQW97_RS18310 (QQW97_18295) flgM 3437941..3438207 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  QQW97_RS18315 (QQW97_18300) yvyF 3438288..3438707 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  QQW97_RS18320 (QQW97_18305) comFC 3438781..3439503 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  QQW97_RS18325 (QQW97_18310) comFB 3439467..3439763 (-) 297 WP_003227989.1 late competence protein ComFB -
  QQW97_RS18330 (QQW97_18315) comFA 3439823..3441214 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  QQW97_RS18335 (QQW97_18320) fakBA 3441320..3442165 (-) 846 WP_003244125.1 DegV family protein -
  QQW97_RS18340 (QQW97_18325) degU 3442263..3442952 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QQW97_RS18345 (QQW97_18330) degS 3443035..3444192 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=841562 QQW97_RS18320 WP_003227991.1 3438781..3439503(-) (comFC) [Bacillus subtilis strain KK026]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=841562 QQW97_RS18320 WP_003227991.1 3438781..3439503(-) (comFC) [Bacillus subtilis strain KK026]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1