Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QQO10_RS12025 Genome accession   NZ_CP127021
Coordinates   2370460..2370855 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC239-MRSA-III(var.) isolate Trinidad&Tobago_2020-021_7037M     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2365460..2375855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQO10_RS12000 (QQO10_12000) thiE 2366060..2366701 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  QQO10_RS12005 (QQO10_12005) thiM 2366703..2367494 (-) 792 WP_285236887.1 hydroxyethylthiazole kinase -
  QQO10_RS12010 (QQO10_12010) thiD 2367478..2368308 (-) 831 WP_285236888.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QQO10_RS12015 (QQO10_12015) tenA 2368301..2368990 (-) 690 WP_000396077.1 thiaminase II -
  QQO10_RS12020 (QQO10_12020) sceD 2369376..2370071 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  QQO10_RS12025 (QQO10_12025) ssb 2370460..2370855 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QQO10_RS12030 (QQO10_12030) - 2371049..2371489 (+) 441 WP_000846746.1 YwpF-like family protein -
  QQO10_RS12035 (QQO10_12035) fabZ 2371548..2371988 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QQO10_RS12040 (QQO10_12040) murA 2372022..2373287 (-) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QQO10_RS12045 (QQO10_12045) - 2373398..2373631 (-) 234 WP_000384523.1 DUF1146 family protein -
  QQO10_RS12050 (QQO10_12050) - 2373763..2373855 (-) 93 WP_001790611.1 hypothetical protein -
  QQO10_RS12055 (QQO10_12055) - 2374193..2374597 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=841346 QQO10_RS12025 WP_000932694.1 2370460..2370855(-) (ssb) [Staphylococcus aureus strain CC239-MRSA-III(var.) isolate Trinidad&Tobago_2020-021_7037M]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=841346 QQO10_RS12025 WP_000932694.1 2370460..2370855(-) (ssb) [Staphylococcus aureus strain CC239-MRSA-III(var.) isolate Trinidad&Tobago_2020-021_7037M]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992