Detailed information NTG0841157

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QQE19_RS14905
• Genome accession: NZ_CP126999
• Coordinates: 3062608..3063408 (+)
• Length: 266 a.a.
• NCBI ID: WP_087827522.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae strain YZ2-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3057608..3068408

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQE19_RS14870 (QQE19_14840)	gspH	3057761..3058276 (+)	516	WP_217219893.1	type II secretion system minor pseudopilin GspH	-
QQE19_RS14875 (QQE19_14845)	gspI	3058273..3058638 (+)	366	WP_032452553.1	type II secretion system minor pseudopilin GspI	-
QQE19_RS14880 (QQE19_14850)	gspJ	3058635..3059231 (+)	597	WP_217259205.1	type II secretion system minor pseudopilin GspJ	-
QQE19_RS14885 (QQE19_14855)	gspK	3059228..3060208 (+)	981	WP_077259115.1	type II secretion system minor pseudopilin GspK	-
QQE19_RS14890 (QQE19_14860)	gspL	3060201..3061397 (+)	1197	WP_217219895.1	type II secretion system protein GspL	-
QQE19_RS14895 (QQE19_14865)	-	3061390..3061875 (+)	486	WP_023292019.1	type II secretion system protein M	-
QQE19_RS14900 (QQE19_14870)	-	3061865..3062593 (+)	729	WP_217219896.1	type II secretion system protein N	-
QQE19_RS14905 (QQE19_14875)	pilD	3062608..3063408 (+)	801	WP_087827522.1	A24 family peptidase	Machinery gene
QQE19_RS14910 (QQE19_14880)	hrpB	3063456..3065885 (-)	2430	WP_087827523.1	ATP-dependent helicase HrpB	-
QQE19_RS14915 (QQE19_14885)	thpR	3065958..3066494 (+)	537	WP_023292015.1	RNA 2',3'-cyclic phosphodiesterase	-
QQE19_RS14920 (QQE19_14890)	sfsA	3066494..3067210 (+)	717	WP_217219897.1	DNA/RNA nuclease SfsA	-
QQE19_RS14925 (QQE19_14895)	dksA	3067373..3067828 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29290.88 Da
• Isoelectric Point: 8.7151

>NTDB_id=841157 QQE19_RS14905 WP_087827522.1 3062608..3063408(+) (pilD) [Klebsiella quasipneumoniae strain YZ2-2]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDEPITLSTPGSCCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELATGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLLASASGLAWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=841157 QQE19_RS14905 WP_087827522.1 3062608..3063408(+) (pilD) [Klebsiella quasipneumoniae strain YZ2-2]
ATGACGACATTAGCCGCATTATCGCTGCATTTTCCCCTTGTCTGGTATGGTTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGACCCAAACCGCGGACGACGAGCCGATAACCCTCAGCA
CGCCGGGCTCATGCTGCCCGCAGTGTCGCCAGCCGATAGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCCCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCAGCGGGCTGGCGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.487	98.872	0.44
pilD	Neisseria gonorrhoeae MS11	43.678	98.12	0.429