Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   VOS73_RS06395 Genome accession   NZ_CP142398
Coordinates   1308625..1309362 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain SX4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1303625..1314362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOS73_RS06370 (VOS73_06385) tyrA 1303999..1305120 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  VOS73_RS06375 (VOS73_06390) pheA 1305163..1306323 (-) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  VOS73_RS06380 (VOS73_06395) pheL 1306422..1306469 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  VOS73_RS06385 (VOS73_06400) raiA 1306573..1306914 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  VOS73_RS06390 (VOS73_06405) - 1307175..1308521 (-) 1347 WP_024179531.1 IS4-like element IS4 family transposase -
  VOS73_RS06395 (VOS73_06410) comL 1308625..1309362 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  VOS73_RS06400 (VOS73_06415) rluD 1309497..1310477 (+) 981 WP_258146676.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VOS73_RS06405 (VOS73_06420) yfiH 1310474..1311205 (+) 732 WP_000040134.1 purine nucleoside phosphorylase YfiH -
  VOS73_RS06410 (VOS73_06425) clpC 1311335..1313908 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=841127 VOS73_RS06395 WP_000197686.1 1308625..1309362(-) (comL) [Escherichia coli strain SX4]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=841127 VOS73_RS06395 WP_000197686.1 1308625..1309362(-) (comL) [Escherichia coli strain SX4]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376