Detailed information NTG0841108

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QP573_RS21030
• Genome accession: NZ_CP126987
• Coordinates: 4322747..4323547 (+)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae subsp. pneumoniae strain T3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4317747..4328547

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QP573_RS20995 (QP573_20995)	gspH	4317903..4318418 (+)	516	WP_032422016.1	type II secretion system minor pseudopilin GspH	-
QP573_RS21000 (QP573_21000)	gspI	4318415..4318780 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
QP573_RS21005 (QP573_21005)	gspJ	4318777..4319373 (+)	597	WP_032433846.1	type II secretion system minor pseudopilin GspJ	-
QP573_RS21010 (QP573_21010)	gspK	4319370..4320356 (+)	987	WP_077255453.1	type II secretion system minor pseudopilin GspK	-
QP573_RS21015 (QP573_21015)	gspL	4320343..4321536 (+)	1194	WP_032416685.1	type II secretion system protein GspL	-
QP573_RS21020 (QP573_21020)	-	4321529..4322014 (+)	486	WP_004145896.1	type II secretion system protein M	-
QP573_RS21025 (QP573_21025)	-	4322004..4322750 (+)	747	WP_004145897.1	type II secretion system protein N	-
QP573_RS21030 (QP573_21030)	pilD	4322747..4323547 (+)	801	WP_004191960.1	A24 family peptidase	Machinery gene
QP573_RS21035 (QP573_21035)	hrpB	4323595..4326024 (-)	2430	Protein_4132	ATP-dependent helicase HrpB	-
QP573_RS21040 (QP573_21040)	thpR	4326097..4326633 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
QP573_RS21045 (QP573_21045)	sfsA	4326633..4327349 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
QP573_RS21050 (QP573_21050)	dksA	4327512..4327967 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=841108 QP573_RS21030 WP_004191960.1 4322747..4323547(+) (pilD) [Klebsiella pneumoniae subsp. pneumoniae strain T3]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=841108 QP573_RS21030 WP_004191960.1 4322747..4323547(+) (pilD) [Klebsiella pneumoniae subsp. pneumoniae strain T3]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421