Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   VKP34_RS07195 Genome accession   NZ_CP142358
Coordinates   1406620..1407654 (-) Length   344 a.a.
NCBI ID   WP_136112228.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 6702-99     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1401620..1412654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP34_RS07160 (VKP34_07160) - 1402396..1402698 (-) 303 WP_002983488.1 YlxQ-related RNA-binding protein -
  VKP34_RS07165 (VKP34_07165) rnpM 1402691..1402987 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  VKP34_RS07170 (VKP34_07170) nusA 1403003..1404160 (-) 1158 WP_002994325.1 transcription termination factor NusA -
  VKP34_RS07175 (VKP34_07175) rimP 1404335..1404871 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  VKP34_RS07185 (VKP34_07185) trmB 1405130..1405765 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  VKP34_RS07190 (VKP34_07190) ccrZ 1405765..1406556 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  VKP34_RS07195 (VKP34_07195) pptB 1406620..1407654 (-) 1035 WP_136112228.1 ABC transporter permease Regulator
  VKP34_RS07200 (VKP34_07200) pptA 1407657..1408382 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  VKP34_RS07205 (VKP34_07205) - 1408454..1408873 (+) 420 WP_002983376.1 HIT family protein -
  VKP34_RS07210 (VKP34_07210) - 1408870..1409226 (+) 357 WP_002988657.1 hypothetical protein -
  VKP34_RS07215 (VKP34_07215) brpA 1409337..1410620 (-) 1284 WP_002983372.1 biofilm formation/cell division transcriptional regulator BrpA -
  VKP34_RS07220 (VKP34_07220) - 1410629..1411153 (-) 525 WP_002994338.1 GNAT family N-acetyltransferase -
  VKP34_RS07225 (VKP34_07225) tsaE 1411128..1411589 (-) 462 WP_136112227.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40241.51 Da        Isoelectric Point: 10.4482

>NTDB_id=840913 VKP34_RS07195 WP_136112228.1 1406620..1407654(-) (pptB) [Streptococcus pyogenes strain 6702-99]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAKRLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=840913 VKP34_RS07195 WP_136112228.1 1406620..1407654(-) (pptB) [Streptococcus pyogenes strain 6702-99]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTATGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTAAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTTTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATTCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43
  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427