Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CYJ72_RS05805 Genome accession   NZ_CP126962
Coordinates   1337002..1337493 (+) Length   163 a.a.
NCBI ID   WP_284628587.1    Uniprot ID   -
Organism   Globicatella sanguinis strain UMB0514     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1332002..1342493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ72_RS05790 (CYJ72_005790) gyrB 1332031..1333941 (+) 1911 WP_066126580.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  CYJ72_RS05795 (CYJ72_005795) gyrA 1333969..1336518 (+) 2550 WP_284628586.1 DNA gyrase subunit A -
  CYJ72_RS05800 (CYJ72_005800) rpsF 1336664..1336963 (+) 300 WP_066126585.1 30S ribosomal protein S6 -
  CYJ72_RS05805 (CYJ72_005805) ssb 1337002..1337493 (+) 492 WP_284628587.1 single-stranded DNA-binding protein Machinery gene
  CYJ72_RS05810 (CYJ72_005810) rpsR 1337517..1337750 (+) 234 WP_066126588.1 30S ribosomal protein S18 -
  CYJ72_RS05815 (CYJ72_005815) istB 1338433..1339191 (-) 759 WP_071408384.1 IS21-like element helper ATPase IstB -
  CYJ72_RS05820 (CYJ72_005820) - 1339188..1340408 (-) 1221 WP_284628589.1 IS21 family transposase -
  CYJ72_RS05825 (CYJ72_005825) - 1341249..1342211 (-) 963 WP_284628591.1 IS30 family transposase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18478.87 Da        Isoelectric Point: 4.5807

>NTDB_id=840828 CYJ72_RS05805 WP_284628587.1 1337002..1337493(+) (ssb) [Globicatella sanguinis strain UMB0514]
MNNVQLIGRLTRDIDLRKTPQGDSVGRFTLAVDRSYKNKQGEYDADFINCTIWRGAADILARYAQKGTKIAVDGNIRTGS
YENQQGQRVYTTEVYVNNFYFVESRSQRNDQGPASSNFGNSNYNNQSSQQNNYSFNNDFNQSSSPFEDFNGSSVDISEDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=840828 CYJ72_RS05805 WP_284628587.1 1337002..1337493(+) (ssb) [Globicatella sanguinis strain UMB0514]
ATGAATAATGTACAATTGATTGGACGTCTAACTCGTGATATTGACTTAAGAAAAACACCGCAAGGTGATTCAGTAGGCCG
TTTTACACTTGCTGTCGATCGTAGCTATAAAAATAAACAAGGTGAATATGATGCCGATTTTATTAATTGTACTATTTGGC
GCGGTGCCGCAGACATTTTAGCTCGTTATGCACAAAAAGGGACTAAAATTGCTGTAGATGGTAATATCCGTACAGGTAGT
TATGAAAATCAACAAGGCCAAAGAGTTTACACAACAGAAGTTTATGTAAATAATTTCTATTTTGTAGAATCAAGATCACA
AAGAAATGATCAAGGTCCAGCATCATCTAACTTTGGAAATTCAAATTATAATAATCAATCAAGTCAACAAAATAACTATT
CGTTCAATAATGATTTTAATCAATCATCTTCTCCATTTGAGGATTTCAATGGATCATCGGTTGATATTTCTGAGGACGAT
TTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

49.419

100

0.521
  ssbA Bacillus subtilis subsp. subtilis str. 168

43.333

100

0.479