Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   F6I26_RS09050 Genome accession   NZ_CP126961
Coordinates   1767887..1768954 (-) Length   355 a.a.
NCBI ID   WP_003026176.1    Uniprot ID   A0A2I1UTR6
Organism   Streptococcus anginosus strain UMB4708     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1762887..1773954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6I26_RS09025 (F6I26_009025) - 1763511..1764968 (+) 1458 WP_024052695.1 sucrose-6-phosphate hydrolase -
  F6I26_RS09030 (F6I26_009030) - 1764949..1765914 (+) 966 WP_003031743.1 LacI family DNA-binding transcriptional regulator -
  F6I26_RS11120 - 1765988..1766810 (-) 823 Protein_1741 Cof-type HAD-IIB family hydrolase -
  F6I26_RS09045 (F6I26_009045) amiF 1766953..1767876 (-) 924 WP_024052698.1 ATP-binding cassette domain-containing protein Regulator
  F6I26_RS09050 (F6I26_009050) amiE 1767887..1768954 (-) 1068 WP_003026176.1 ABC transporter ATP-binding protein Regulator
  F6I26_RS09055 (F6I26_009055) amiD 1768963..1769889 (-) 927 WP_024052699.1 oligopeptide ABC transporter permease OppC Regulator
  F6I26_RS09060 (F6I26_009060) amiC 1769889..1771385 (-) 1497 WP_024052700.1 ABC transporter permease Regulator
  F6I26_RS09065 (F6I26_009065) amiA3 1771762..1773741 (-) 1980 WP_024052701.1 peptide ABC transporter substrate-binding protein Regulator

Sequence


Protein


Download         Length: 355 a.a.        Molecular weight: 39702.39 Da        Isoelectric Point: 4.7502

>NTDB_id=840803 F6I26_RS09050 WP_003026176.1 1767887..1768954(-) (amiE) [Streptococcus anginosus strain UMB4708]
MTQEKNVILTARDIVVEFDVRDKVLTAIRGVSLDLIEGEVLALVGESGSGKSVLTKTFTGMLEENGRVAQGTIDYRGQDL
TKLKSNKDWEPIRGVKIATIFQDPMTSLDPINTIGSQITEVIIKHQKKTPKEAKEMAVDYMNKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQHEYEFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPRHPYTWSLLSSLPQLADDKGELYSIPGTPPSLYSHLQGDAFALRSDYAMEIDFEEKPPQIYVTDTHWAK
TWLLHENAPKVNKPAVIDDLHEKISSKMGFAHLDA

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=840803 F6I26_RS09050 WP_003026176.1 1767887..1768954(-) (amiE) [Streptococcus anginosus strain UMB4708]
ATGACACAAGAAAAAAATGTAATATTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGATAAAGTCTTAACAGC
CATTCGTGGTGTTTCGCTTGACCTTATCGAAGGTGAGGTTCTTGCACTTGTAGGAGAATCTGGTTCTGGTAAGTCTGTTT
TGACAAAGACATTTACAGGAATGTTAGAGGAAAATGGTCGAGTTGCTCAAGGAACGATTGATTACCGTGGACAAGATTTG
ACAAAATTGAAGTCTAATAAAGATTGGGAACCTATACGCGGTGTTAAAATTGCAACAATCTTCCAAGATCCGATGACGAG
TTTGGACCCTATTAACACAATTGGTAGCCAAATTACAGAAGTGATTATCAAGCATCAAAAGAAAACGCCAAAAGAAGCAA
AAGAAATGGCTGTTGACTATATGAATAAGGTCGGCATTCCTGATGCTGAAAAGCGTTTTAATGAATACCCATTCCAATAT
TCAGGAGGAATGCGTCAACGGATTGTTATCGCTATTGCGCTTGCTTGTCGACCTGATATCCTTATCTGTGATGAACCAAC
GACAGCGCTTGACGTTACGATTCAGGCACAAATCATTGATTTGTTGAAATCTTTGCAACACGAGTATGAATTCACAACTA
TTTTTATCACCCACGACCTGGGAGTGGTAGCAAGTATTGCAGATAAGGTTGCGGTTATGTATGCTGGTGAAATCGTTGAA
TACGGAACAGTAGAAGAAGTCTTTTACGATCCACGTCATCCTTACACTTGGAGTTTGTTATCTAGTCTGCCTCAGTTAGC
AGATGATAAGGGTGAGTTGTATTCAATTCCTGGAACGCCGCCATCTCTCTATTCACATTTACAAGGAGATGCATTTGCCT
TGCGTTCAGATTATGCTATGGAAATTGATTTTGAAGAGAAACCACCTCAAATTTATGTAACGGATACCCACTGGGCAAAA
ACATGGTTGTTACATGAGAATGCTCCAAAAGTGAATAAGCCAGCTGTTATTGATGATTTACACGAAAAAATTAGCTCAAA
AATGGGCTTTGCCCATTTAGACGCCTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2I1UTR6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

86.119

99.437

0.856

  amiE Streptococcus thermophilus LMG 18311

84.703

99.437

0.842

  amiE Streptococcus thermophilus LMD-9

84.703

99.437

0.842

  oppD Streptococcus mutans UA159

56.215

99.718

0.561