Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   F6I26_RS04505 Genome accession   NZ_CP126961
Coordinates   890704..891936 (+) Length   410 a.a.
NCBI ID   WP_150867011.1    Uniprot ID   A0AAW5THJ7
Organism   Streptococcus anginosus strain UMB4708     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 885704..896936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6I26_RS04470 (F6I26_004470) - 886089..886274 (+) 186 WP_191620755.1 hypothetical protein -
  F6I26_RS04475 (F6I26_004475) - 886285..886983 (-) 699 WP_224784155.1 helix-turn-helix domain-containing protein -
  F6I26_RS04480 (F6I26_004480) - 887372..887638 (+) 267 WP_024052284.1 chorismate mutase -
  F6I26_RS04485 (F6I26_004485) - 887653..888870 (+) 1218 WP_024052283.1 voltage-gated chloride channel family protein -
  F6I26_RS04490 (F6I26_004490) - 888956..889795 (+) 840 WP_024052282.1 thymidylate synthase -
  F6I26_RS04495 (F6I26_004495) - 889980..890492 (+) 513 WP_024052281.1 dihydrofolate reductase -
  F6I26_RS04500 (F6I26_004500) - 890492..890665 (+) 174 WP_003024903.1 hypothetical protein -
  F6I26_RS04505 (F6I26_004505) clpX 890704..891936 (+) 1233 WP_150867011.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  F6I26_RS04510 (F6I26_004510) yihA 891948..892535 (+) 588 WP_024052279.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  F6I26_RS04515 (F6I26_004515) - 892716..893423 (+) 708 WP_003024892.1 glucosaminidase domain-containing protein -
  F6I26_RS04520 (F6I26_004520) - 893606..895352 (+) 1747 Protein_852 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45688.21 Da        Isoelectric Point: 4.4242

>NTDB_id=840792 F6I26_RS04505 WP_150867011.1 890704..891936(+) (clpX) [Streptococcus anginosus strain UMB4708]
MPTNRTNEMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPQELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDNREEEDDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDETGSYMQEIISEDIQKFGLIPELIGRLPVFAALEPLTVDDLVR
ILREPKNALVKQYQTLLSYDDVKLEFDDDALQEIANKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=840792 F6I26_RS04505 WP_150867011.1 890704..891936(+) (clpX) [Streptococcus anginosus strain UMB4708]
ATGCCTACAAATCGTACGAATGAAATGATGGTTTATTGCTCTTTTTGTGGTAAAAGCCAAGAAGAAGTCCAAAAAATTAT
CGCAGGAAATAATGCCTTTATTTGTAATGAATGCGTGGAATTAGCGCAAGAAATCATCAGAGAGGAACTAGCAGAAGAAG
TACTAGCGGACTTGTCAGAAGTGCCAAAACCGCAAGAACTACTCAATATTTTGAATCATTATGTGATTGGGCAAGACCGT
GCTAAGCGAGCATTGGCTGTTGCTGTATACAATCACTATAAACGTATCAATTTTCACGATAATCGTGAAGAAGAGGATGA
TGTCGAATTACAAAAATCCAATATTCTTATGATTGGGCCAACTGGTTCTGGTAAGACTTTTCTTGCTCAAACCTTGGCGA
AAAGTCTGAATGTTCCTTTTGCGATTGCAGATGCGACAGCTTTGACAGAAGCTGGGTATGTCGGAGAAGATGTTGAAAAT
ATTCTCTTGAAACTCTTGCAAGCAGCAGATTTCAATATTGAGCGTGCAGAACGTGGTATCATCTATGTAGATGAGATTGA
CAAAATTGCGAAGAAAAGCGAAAACGTGTCTATTACTCGCGATGTGTCTGGTGAAGGCGTTCAGCAAGCGCTCCTCAAGA
TTATTGAAGGAACTGTAGCCAGCGTACCTCCGCAAGGCGGTCGCAAGCACCCTCAACAAGAAATGATTCAAGTAGATACC
AAGAATATTCTCTTTATCGTTGGTGGTGCATTTGACGGTATTGAAGAAATTGTCAAACAACGTCTAGGCGAAAAAATTAT
CGGTTTTGGTCAAAATAATAAAGCCATTGATGAAACTGGTTCTTATATGCAAGAAATCATCTCTGAAGATATTCAAAAAT
TTGGTTTGATTCCGGAATTGATTGGTCGTTTGCCTGTGTTTGCAGCGCTTGAGCCTTTGACAGTTGATGATTTGGTGCGA
ATCCTGCGCGAACCAAAGAATGCTTTAGTGAAGCAATATCAGACTCTCCTTTCTTATGACGATGTTAAACTAGAGTTTGA
TGATGATGCTCTTCAGGAAATTGCTAACAAGGCCATTGAACGCAAGACAGGTGCGCGTGGATTACGTTCAATCATTGAGG
AAACTATGATGGATGTTATGTTTGAAGTTCCAAGTCAAGAAAATGTGAAGCTGGTACGGATTACCAAGGAAGCAGTTGAT
GGAACGGATAAGCCGATTTTAGAAACAGCATAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.585

100

0.866
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

98.049

0.571