Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SA231_RS11855 Genome accession   NZ_AP024203
Coordinates   2394288..2394734 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA23-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2389288..2399734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA231_RS11825 (SA231_22930) gcvPA 2390214..2391560 (-) 1347 WP_117219988.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SA231_RS11830 (SA231_22940) gcvT 2391580..2392671 (-) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  SA231_RS11835 (SA231_22950) - 2392830..2393354 (-) 525 WP_033858309.1 shikimate kinase -
  SA231_RS11840 - 2393344..2393490 (-) 147 WP_001789879.1 hypothetical protein -
  SA231_RS11845 (SA231_22960) comGF 2393587..2394084 (-) 498 WP_117219987.1 competence type IV pilus minor pilin ComGF Machinery gene
  SA231_RS11850 (SA231_22970) comGE 2394002..2394301 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  SA231_RS11855 (SA231_22980) comGD 2394288..2394734 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  SA231_RS11860 (SA231_22990) comGC 2394712..2395023 (-) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  SA231_RS11865 (SA231_23000) comGB 2395037..2396107 (-) 1071 WP_000776409.1 competence type IV pilus assembly protein ComGB Machinery gene
  SA231_RS11870 (SA231_23010) comGA 2396079..2397053 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  SA231_RS11875 (SA231_23020) - 2397105..2397728 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  SA231_RS11880 (SA231_23030) - 2397725..2398054 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SA231_RS11885 (SA231_23040) - 2398054..2399040 (-) 987 WP_000161307.1 ROK family glucokinase -
  SA231_RS11890 (SA231_23050) - 2399037..2399240 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=84033 SA231_RS11855 WP_001796473.1 2394288..2394734(-) (comGD) [Staphylococcus aureus strain SA23-1]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=84033 SA231_RS11855 WP_001796473.1 2394288..2394734(-) (comGD) [Staphylococcus aureus strain SA23-1]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
CATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment