Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   VKP38_RS02435 Genome accession   NZ_CP142352
Coordinates   458961..459995 (+) Length   344 a.a.
NCBI ID   WP_010922583.1    Uniprot ID   A0A0H2UWB0
Organism   Streptococcus pyogenes strain 2907-97     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 453961..464995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP38_RS02405 (VKP38_02405) tsaE 455026..455487 (+) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  VKP38_RS02410 (VKP38_02410) - 455462..455986 (+) 525 WP_020905405.1 GNAT family N-acetyltransferase -
  VKP38_RS02415 (VKP38_02415) brpA 455995..457278 (+) 1284 WP_002983372.1 biofilm formation/cell division transcriptional regulator BrpA -
  VKP38_RS02420 (VKP38_02420) - 457389..457745 (-) 357 WP_032464516.1 hypothetical protein -
  VKP38_RS02425 (VKP38_02425) - 457742..458161 (-) 420 WP_002983376.1 HIT family protein -
  VKP38_RS02430 (VKP38_02430) pptA 458233..458958 (+) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  VKP38_RS02435 (VKP38_02435) pptB 458961..459995 (+) 1035 WP_010922583.1 ABC transporter permease Regulator
  VKP38_RS02440 (VKP38_02440) ccrZ 460059..460850 (+) 792 WP_002983385.1 cell cycle regulator CcrZ -
  VKP38_RS02445 (VKP38_02445) trmB 460850..461485 (+) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  VKP38_RS02455 (VKP38_02455) rimP 461744..462280 (+) 537 WP_196198777.1 ribosome maturation factor RimP -
  VKP38_RS02460 (VKP38_02460) nusA 462455..463612 (+) 1158 WP_002994325.1 transcription termination factor NusA -
  VKP38_RS02465 (VKP38_02465) rnpM 463628..463924 (+) 297 WP_002983486.1 RNase P modulator RnpM -
  VKP38_RS02470 (VKP38_02470) - 463917..464219 (+) 303 WP_002983488.1 YlxQ-related RNA-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40274.52 Da        Isoelectric Point: 10.3713

>NTDB_id=840302 VKP38_RS02435 WP_010922583.1 458961..459995(+) (pptB) [Streptococcus pyogenes strain 2907-97]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNMLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=840302 VKP38_RS02435 WP_010922583.1 458961..459995(+) (pptB) [Streptococcus pyogenes strain 2907-97]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATATGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UWB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43
  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427