Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   VKP55_RS07010 Genome accession   NZ_CP142351
Coordinates   1378437..1379471 (-) Length   344 a.a.
NCBI ID   WP_002988663.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain SS1366     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1373437..1384471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP55_RS06975 (VKP55_06975) - 1374213..1374515 (-) 303 WP_002983488.1 YlxQ-related RNA-binding protein -
  VKP55_RS06980 (VKP55_06980) rnpM 1374508..1374804 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  VKP55_RS06985 (VKP55_06985) nusA 1374820..1375977 (-) 1158 WP_002994325.1 transcription termination factor NusA -
  VKP55_RS06990 (VKP55_06990) rimP 1376152..1376688 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  VKP55_RS07000 (VKP55_07000) trmB 1376947..1377582 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  VKP55_RS07005 (VKP55_07005) ccrZ 1377582..1378373 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  VKP55_RS07010 (VKP55_07010) pptB 1378437..1379471 (-) 1035 WP_002988663.1 ABC transporter permease Regulator
  VKP55_RS07015 (VKP55_07015) pptA 1379474..1380199 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  VKP55_RS07020 (VKP55_07020) - 1380271..1380690 (+) 420 WP_326674040.1 HIT family protein -
  VKP55_RS07025 (VKP55_07025) - 1380687..1381043 (+) 357 WP_115219621.1 chemotaxis protein -
  VKP55_RS07030 (VKP55_07030) brpA 1381154..1382437 (-) 1284 WP_002994335.1 biofilm formation/cell division transcriptional regulator BrpA -
  VKP55_RS07035 (VKP55_07035) - 1382446..1382970 (-) 525 WP_002994338.1 GNAT family N-acetyltransferase -
  VKP55_RS07040 (VKP55_07040) tsaE 1382945..1383406 (-) 462 WP_002983367.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40241.47 Da        Isoelectric Point: 10.4168

>NTDB_id=840245 VKP55_RS07010 WP_002988663.1 1378437..1379471(-) (pptB) [Streptococcus pyogenes strain SS1366]
MKALFLKRRQNFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=840245 VKP55_RS07010 WP_002988663.1 1378437..1379471(-) (pptB) [Streptococcus pyogenes strain SS1366]
ATGAAAGCATTATTTTTGAAACGCCGTCAAAACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTTTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATTCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43
  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427