Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SA231_RS06300 Genome accession   NZ_AP024203
Coordinates   1285289..1285858 (+) Length   189 a.a.
NCBI ID   WP_000872878.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA23-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1280289..1290858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA231_RS06275 (SA231_12020) cysE 1281502..1282149 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  SA231_RS06280 (SA231_12030) cysS 1282133..1283533 (+) 1401 WP_000631980.1 cysteine--tRNA ligase -
  SA231_RS06285 (SA231_12040) - 1283526..1283930 (+) 405 WP_229345081.1 Mini-ribonuclease 3 -
  SA231_RS06290 (SA231_12050) rlmB 1283938..1284684 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SA231_RS06295 (SA231_12060) - 1284684..1285208 (+) 525 WP_000664731.1 NYN domain-containing protein -
  SA231_RS06300 (SA231_12070) sigH 1285289..1285858 (+) 570 WP_000872878.1 RNA polymerase sigma factor Regulator
  SA231_RS06305 rpmG 1285973..1286116 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  SA231_RS06310 (SA231_12080) secE 1286172..1286354 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SA231_RS06315 (SA231_12090) nusG 1286367..1286915 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SA231_RS06320 (SA231_12100) rplK 1287096..1287518 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SA231_RS06325 (SA231_12110) rplA 1287726..1288418 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  SA231_RS06330 (SA231_12120) rplJ 1288690..1289190 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  SA231_RS06335 (SA231_12130) rplL 1289233..1289601 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SA231_RS06340 (SA231_12140) - 1289776..1290384 (+) 609 WP_000020295.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=84019 SA231_RS06300 WP_000872878.1 1285289..1285858(+) (sigH) [Staphylococcus aureus strain SA23-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=84019 SA231_RS06300 WP_000872878.1 1285289..1285858(+) (sigH) [Staphylococcus aureus strain SA23-1]
TTGAAATATGATTTGACAACTCAAGATAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment