Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   VKP56_RS06995 Genome accession   NZ_CP142350
Coordinates   1382812..1383846 (-) Length   344 a.a.
NCBI ID   WP_136290717.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain SS1445     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1377812..1388846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP56_RS06960 (VKP56_06960) - 1378588..1378890 (-) 303 WP_002983488.1 YlxQ-related RNA-binding protein -
  VKP56_RS06965 (VKP56_06965) rnpM 1378883..1379179 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  VKP56_RS06970 (VKP56_06970) nusA 1379195..1380352 (-) 1158 WP_002983485.1 transcription termination factor NusA -
  VKP56_RS06975 (VKP56_06975) rimP 1380527..1381063 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  VKP56_RS06985 (VKP56_06985) trmB 1381322..1381957 (-) 636 WP_326656821.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  VKP56_RS06990 (VKP56_06990) ccrZ 1381957..1382748 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  VKP56_RS06995 (VKP56_06995) pptB 1382812..1383846 (-) 1035 WP_136290717.1 ABC transporter permease Regulator
  VKP56_RS07000 (VKP56_07000) pptA 1383849..1384574 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  VKP56_RS07005 (VKP56_07005) - 1384646..1385065 (+) 420 WP_002983376.1 HIT family protein -
  VKP56_RS07010 (VKP56_07010) - 1385062..1385418 (+) 357 WP_030126323.1 hypothetical protein -
  VKP56_RS07015 (VKP56_07015) brpA 1385529..1386812 (-) 1284 WP_030126322.1 biofilm formation/cell division transcriptional regulator BrpA -
  VKP56_RS07020 (VKP56_07020) - 1386821..1387345 (-) 525 WP_136290716.1 GNAT family N-acetyltransferase -
  VKP56_RS07025 (VKP56_07025) tsaE 1387320..1387781 (-) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40297.55 Da        Isoelectric Point: 10.3713

>NTDB_id=840148 VKP56_RS06995 WP_136290717.1 1382812..1383846(-) (pptB) [Streptococcus pyogenes strain SS1445]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTHHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNMLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=840148 VKP56_RS06995 WP_136290717.1 1382812..1383846(-) (pptB) [Streptococcus pyogenes strain SS1445]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGCATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATATGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

42.733

100

0.427
  pptB Streptococcus salivarius strain HSISS4

42.442

100

0.424