Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   VR625_RS15650 Genome accession   NZ_CP142147
Coordinates   3557356..3558018 (-) Length   220 a.a.
NCBI ID   WP_161031211.1    Uniprot ID   -
Organism   Streptomyces sp. DSS69     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3552356..3563018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR625_RS15635 - 3553374..3554657 (-) 1284 WP_109164871.1 adenylosuccinate synthase -
  VR625_RS15640 - 3554844..3555695 (+) 852 WP_345982539.1 diacylglycerol kinase -
  VR625_RS15645 - 3556016..3557221 (-) 1206 WP_345982540.1 cytochrome P450 -
  VR625_RS15650 vraR 3557356..3558018 (-) 663 WP_161031211.1 response regulator transcription factor Regulator
  VR625_RS15655 - 3558015..3559355 (-) 1341 WP_345982541.1 histidine kinase -
  VR625_RS15660 - 3559519..3559944 (-) 426 WP_345982542.1 NAD(P)H-binding protein -
  VR625_RS15665 - 3560035..3560913 (-) 879 WP_161031213.1 alpha/beta hydrolase -
  VR625_RS15670 kynU 3561050..3562270 (-) 1221 WP_345982543.1 kynureninase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23679.53 Da        Isoelectric Point: 4.7962

>NTDB_id=839953 VR625_RS15650 WP_161031211.1 3557356..3558018(-) (vraR) [Streptomyces sp. DSS69]
MSDIRVLIVDDQMMVREGFSVLLNAMPGITVVGEAVDGRDAIDKVTALFPDVVLMDIRMPGMNGIDATREIVAQVVDAKV
LVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVASGEALLAPTVTRRLITEFSKLAEAPRPPALARVGDLTER
ETEVLVLIAQGLSNAEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=839953 VR625_RS15650 WP_161031211.1 3557356..3558018(-) (vraR) [Streptomyces sp. DSS69]
ATGAGCGACATCCGCGTCCTGATCGTGGACGACCAGATGATGGTCCGCGAGGGCTTCTCCGTCCTGCTCAACGCCATGCC
GGGGATCACCGTCGTGGGGGAGGCGGTGGACGGCCGGGACGCCATCGACAAGGTCACGGCCCTCTTCCCGGACGTCGTCC
TGATGGACATCCGGATGCCGGGGATGAACGGCATCGACGCCACCCGCGAGATCGTCGCGCAGGTCGTGGACGCCAAGGTG
CTGGTCCTGACCACCTTCGACCTGGACGAGTACGTGTACCAGGCGCTGCGGGCCGGGGCCTCGGGCTTCCTCCTCAAGGA
CGCCTCGGCCCGGCAGCTCGCGGACGGTGTACGGGTGGTGGCCTCGGGCGAGGCGCTGCTCGCGCCGACCGTGACCCGGC
GGCTGATCACCGAGTTCTCCAAGCTCGCGGAGGCCCCGAGACCGCCCGCGCTCGCCCGGGTCGGGGACCTCACCGAGCGC
GAGACGGAGGTGCTCGTCCTGATCGCCCAGGGGCTGTCCAACGCGGAGATCGCCTCGCATCTGATCGTCGCCGAGTCCAC
GATCAAGACGCATGTCAGCCGCATCCTGGTGAAGCTGGGGCTGCGCGACCGGACGCAGGCGGCGGTGTTCGCGTACGAGG
CGCGGCTGGTCACACCGGGGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-211)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.393

97.273

0.432
  degU Bacillus subtilis subsp. subtilis str. 168

41.818

100

0.418