Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   VR625_RS14545 Genome accession   NZ_CP142147
Coordinates   3254875..3256296 (+) Length   473 a.a.
NCBI ID   WP_109165027.1    Uniprot ID   -
Organism   Streptomyces sp. DSS69     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3249875..3261296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR625_RS14525 - 3249939..3250772 (-) 834 WP_204117215.1 sugar phosphate isomerase/epimerase -
  VR625_RS14530 - 3250869..3251819 (-) 951 WP_345982432.1 Ppx/GppA phosphatase family protein -
  VR625_RS14535 - 3251859..3252701 (+) 843 WP_109165029.1 hypothetical protein -
  VR625_RS14540 - 3252797..3254728 (-) 1932 WP_345982433.1 hypothetical protein -
  VR625_RS14545 radA/sms 3254875..3256296 (+) 1422 WP_109165027.1 DNA repair protein RadA Machinery gene
  VR625_RS14550 disA 3256378..3257502 (+) 1125 WP_073874337.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  VR625_RS14555 - 3257752..3258414 (+) 663 WP_345982434.1 zinc ribbon domain-containing protein -
  VR625_RS14560 - 3258430..3259182 (-) 753 WP_337192446.1 hypothetical protein -
  VR625_RS14565 - 3259508..3260419 (+) 912 WP_345982435.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 49869.00 Da        Isoelectric Point: 8.4953

>NTDB_id=839947 VR625_RS14545 WP_109165027.1 3254875..3256296(+) (radA/sms) [Streptomyces sp. DSS69]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAAVPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRMRADRIKAINDHLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPSGMKVTEVADMGDALRVLPRRSRQEAPQSRQEDNARR

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=839947 VR625_RS14545 WP_109165027.1 3254875..3256296(+) (radA/sms) [Streptomyces sp. DSS69]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACCACCGCCAAATGGCT
CGGCCGTTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTGCGCACCACCGCGGCCG
GCCGGGTCTCCACCGCCGCCGTTCCCATCGGCCAGGTCGACAGCCGGCAGGCCACCGCCCGGTCCACCGGCGTCGGTGAG
CTGGACCGGGTGCTCGGCGGCGGGCTCGTGCCGGGGGCCGTCGTGCTGCTGGCGGGCGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTCCTCGACGTGGCGGCCAAGGCGGCGAGCGACGACCACCGCACGCTCTATGTGACCGCCGAGGAGTCCGCGAGCC
AGGTCCGGATGCGGGCCGACCGGATCAAGGCGATCAACGACCACCTCTACCTCGCGGCGGAGACCGATCTGTCGGCCGTG
CTCGGGCATCTGGACGCGGTGAAGCCCTCCCTGCTGATCCTGGACTCGGTGCAGACGGTCGCCTCGCCCGAGATCGACGG
CGCGCCCGGCGGGATGGCCCAGGTCCGGGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGGCCACGC
TGCTGGTCGGCCATGTCACGAAGGACGGCGCGATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTCGACGTGGTGCTCTCC
TTCGAGGGCGACCGGCACGCCCGGCTGCGCCTGGTGCGCGGCGTCAAGAACCGTTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCGGGCCTCTTCCTCACCCGGCGCGACGTGGCGGTGC
CCGGCACCTGTCTGACGGTGACGCTGGAGGGCAAGCGGCCTCTGGTCGCCGAGGTCCAGGCGCTCACCGTCGACTCCCAG
ATCCCCTCGCCCCGGCGCACCACCTCCGGTCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTGCTGGAGCAGCGCGG
CCGGATCAGCGCGCTCGGCAAGCGCGACATCTACAGCGCGACGGTCGGCGGTGTGAAGCTCACCGAGCCCGCCGCGGACC
TCGCGATCGCGCTCGCGCTGGCCAGTGCCGCCAGCGACACCCCGCTCCCGAAGAACCTGGTCGCGATCGGTGAGGTGGGG
CTAGCGGGCGAGGTCCGCAGGGTCACCGGAGTCCAGCGGAGACTGGCCGAGGCGCACCGTCTCGGCTTCACCCACGCCTT
GGTCCCGACCGACCCGGGAAGGGTTCCATCGGGTATGAAGGTCACAGAAGTCGCCGACATGGGGGATGCTCTGCGGGTCC
TCCCGCGCCGGTCTCGTCAAGAGGCGCCGCAGTCTCGTCAGGAAGACAACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

95.772

0.416
  radA Streptococcus pneumoniae Rx1

42.605

95.772

0.408
  radA Streptococcus pneumoniae D39

42.605

95.772

0.408
  radA Streptococcus pneumoniae R6

42.605

95.772

0.408
  radA Streptococcus pneumoniae TIGR4

42.605

95.772

0.408
  radA Streptococcus mitis SK321

44.056

90.698

0.4
  radA Streptococcus mitis NCTC 12261

44.056

90.698

0.4