Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   VR625_RS09355 Genome accession   NZ_CP142147
Coordinates   2033006..2033695 (+) Length   229 a.a.
NCBI ID   WP_345982026.1    Uniprot ID   -
Organism   Streptomyces sp. DSS69     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2028006..2038695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR625_RS09335 - 2028473..2029162 (+) 690 WP_161030507.1 TetR family transcriptional regulator -
  VR625_RS09340 - 2029259..2030467 (+) 1209 WP_345982023.1 alpha/beta hydrolase -
  VR625_RS09345 - 2030554..2031522 (+) 969 WP_345982024.1 DUF4429 domain-containing protein -
  VR625_RS09350 - 2031639..2033009 (+) 1371 WP_345982025.1 sensor histidine kinase -
  VR625_RS09355 vraR 2033006..2033695 (+) 690 WP_345982026.1 response regulator transcription factor Regulator
  VR625_RS09360 - 2033861..2034919 (+) 1059 WP_345982027.1 alpha/beta hydrolase -
  VR625_RS09365 - 2034916..2036175 (+) 1260 WP_109165897.1 acyltransferase -
  VR625_RS09370 - 2036274..2037299 (-) 1026 WP_204117222.1 aldo/keto reductase -
  VR625_RS09375 - 2037314..2037826 (-) 513 WP_345982028.1 MerR family transcriptional regulator -
  VR625_RS09380 - 2037971..2038522 (-) 552 WP_345984137.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24342.11 Da        Isoelectric Point: 6.1151

>NTDB_id=839935 VR625_RS09355 WP_345982026.1 2033006..2033695(+) (vraR) [Streptomyces sp. DSS69]
MTIRVIIVDDQAMVRAGFAALLSAQSDIDVVGEAADGRQGVEVSRHQHPDVVLMDVRMPKMDGLAAARELLNPPVGVVHR
PKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAAQRPSGATRGGQALRLN
GLTPRETEVLELIARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESGLVTPGDAGV

Nucleotide


Download         Length: 690 bp        

>NTDB_id=839935 VR625_RS09355 WP_345982026.1 2033006..2033695(+) (vraR) [Streptomyces sp. DSS69]
GTGACCATCCGCGTGATCATCGTCGACGACCAGGCCATGGTGCGGGCGGGGTTCGCGGCGCTGCTGTCGGCGCAGAGCGA
CATCGACGTGGTCGGCGAGGCGGCGGACGGCCGGCAGGGCGTGGAGGTCAGCCGTCATCAGCACCCGGATGTGGTCCTGA
TGGATGTGCGGATGCCGAAGATGGACGGACTGGCCGCCGCCCGCGAGCTGTTGAACCCGCCGGTCGGGGTGGTGCACCGG
CCGAAGGTGCTGATGCTGACCACGTTCGACGTGGACGACTATGTGTACGAGGCGCTCCGCGCCGGGGCCTCCGGGTTCCT
GCTGAAGGACGCCCCGCCCGCCGATCTGATCGCGGCGGTACGAGTGGTGGCGGCGGGCGACGCGCTGCTGGCGCCCTCGG
TGACGCGGCGGCTGATCGCGGACTTCGCGGCACAGCGGCCCTCGGGGGCGACGCGCGGCGGCCAGGCCCTGCGGCTGAAC
GGTCTGACGCCGCGCGAGACGGAGGTGCTGGAGCTGATCGCCCGGGGGCTGTCGAACCAGGAGATCGCGGGGCGGCTGGT
GCTGGCCGAGCAGACCGTGAAGACGCACATCGGGCGGGTGCTGGCCAAGCTGGACCTGCGGGACCGGGCGCAGGCGGTGA
TCTTCGCGTACGAGTCGGGGCTCGTGACGCCGGGGGACGCGGGAGTCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(162-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.071

97.817

0.402
  degU Bacillus subtilis subsp. subtilis str. 168

37.885

99.127

0.376