Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   VR625_RS06570 Genome accession   NZ_CP142147
Coordinates   1427462..1428106 (-) Length   214 a.a.
NCBI ID   WP_345981816.1    Uniprot ID   -
Organism   Streptomyces sp. DSS69     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1422462..1433106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR625_RS06545 - 1423289..1424290 (-) 1002 WP_109166365.1 SPFH domain-containing protein -
  VR625_RS06550 - 1424390..1424818 (-) 429 WP_109166364.1 NfeD family protein -
  VR625_RS06555 - 1424928..1425725 (-) 798 WP_109166363.1 ABC transporter ATP-binding protein -
  VR625_RS06560 - 1425884..1426675 (+) 792 WP_109166362.1 hypothetical protein -
  VR625_RS06565 - 1427088..1427339 (-) 252 WP_093693195.1 chaplin -
  VR625_RS06570 vraR 1427462..1428106 (-) 645 WP_345981816.1 response regulator transcription factor Regulator
  VR625_RS06575 - 1428099..1429244 (-) 1146 WP_109166360.1 GAF domain-containing sensor histidine kinase -
  VR625_RS06580 - 1429491..1430213 (+) 723 WP_109167569.1 SDR family oxidoreductase -
  VR625_RS06585 - 1430219..1431355 (+) 1137 WP_345984122.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  VR625_RS06590 - 1431627..1432373 (+) 747 WP_161032384.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23059.35 Da        Isoelectric Point: 5.3855

>NTDB_id=839931 VR625_RS06570 WP_345981816.1 1427462..1428106(-) (vraR) [Streptomyces sp. DSS69]
MADKIIRVLLVDDHQVVRRGLRTFLEIQDDIEVVGEASEGSEGVARTEELRPDVVLMDIKMPGTDGIEALRRLRQLDNPA
KILIVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLVQDDAGGGTGRGSTLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRNGAAG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=839931 VR625_RS06570 WP_345981816.1 1427462..1428106(-) (vraR) [Streptomyces sp. DSS69]
GTGGCTGACAAGATCATCAGGGTGCTGCTGGTCGACGACCACCAGGTGGTCCGCCGCGGACTGCGCACCTTCCTGGAGAT
CCAGGACGACATAGAAGTGGTCGGTGAGGCGTCCGAGGGGTCGGAGGGTGTGGCCCGTACCGAGGAGCTCCGGCCCGACG
TCGTGCTCATGGACATCAAGATGCCCGGCACCGACGGCATCGAGGCGCTGCGCAGGCTCCGCCAGCTCGACAACCCGGCC
AAGATCCTCATCGTCACCAGCTTCACCGAACAGCGCACGGTGGTCCCGGCCCTGCGCGCCGGAGCCTCCGGTTACGTCTA
CAAGGACGTCGATCCGGACGCCCTGGCCGGCGCCATCCGCTCGGTCCACGCCGGACACGTCCTGCTCCAGCCGGAGGTCG
CCGGTGCACTCCTCGTTCAGGACGACGCGGGGGGTGGTACGGGCCGGGGGAGCACCCTCACCGAACGCGAGCGCGAAGTG
CTCGGCCTGATCGCGGACGGCCGCTCCAACCGGGAGATCGCCCGCGCCCTCGTCCTCTCCGAGAAGACGGTCAAGACCCA
TGTGTCGAACATCCTGATGAAACTCGATCTGGCGGACCGCACGCAGGCGGCGCTGTGGGCGGTACGCAACGGAGCCGCGG
GCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.444

96.729

0.43
  degU Bacillus subtilis subsp. subtilis str. 168

38.462

100

0.397