Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   VRA41_RS08605 Genome accession   NZ_CP142105
Coordinates   1650129..1650446 (-) Length   105 a.a.
NCBI ID   WP_002952035.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain SCB0351     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1645129..1655446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRA41_RS08575 (VRA41_08575) - 1645478..1646140 (-) 663 WP_011227583.1 CPBP family intramembrane glutamic endopeptidase -
  VRA41_RS08580 (VRA41_08580) - 1646243..1646691 (-) 449 Protein_1642 CAAX protease -
  VRA41_RS08585 (VRA41_08585) - 1646765..1647190 (-) 426 WP_041827107.1 CPBP family intramembrane glutamic endopeptidase -
  VRA41_RS08590 (VRA41_08590) - 1647433..1647630 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  VRA41_RS08595 (VRA41_08595) - 1647879..1649072 (-) 1194 WP_022096898.1 acetate kinase -
  VRA41_RS08600 (VRA41_08600) comGH 1649128..1650084 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  VRA41_RS08605 (VRA41_08605) comGG 1650129..1650446 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG Machinery gene
  VRA41_RS08610 (VRA41_08610) comGF 1650424..1650861 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  VRA41_RS08615 (VRA41_08615) comGE 1650845..1651138 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE Machinery gene
  VRA41_RS08620 (VRA41_08620) comGD 1651110..1651538 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  VRA41_RS08625 (VRA41_08625) comGC 1651498..1651824 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  VRA41_RS08630 (VRA41_08630) comGB 1651821..1652921 (-) 1101 WP_148148889.1 competence type IV pilus assembly protein ComGB Machinery gene
  VRA41_RS08635 (VRA41_08635) comGA/cglA/cilD 1652803..1653744 (-) 942 WP_011226629.1 competence type IV pilus ATPase ComGA Machinery gene
  VRA41_RS08640 (VRA41_08640) - 1653825..1654187 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11824.93 Da        Isoelectric Point: 10.6334

>NTDB_id=839907 VRA41_RS08605 WP_002952035.1 1650129..1650446(-) (comGG) [Streptococcus thermophilus strain SCB0351]
MLLKKQVRGGVLLYALFMAGIFTLLLQVYLERVVASSRQNQAQIVASQSRLMAEMTMDLVDKEAGAFSFSQGTTTYEVKG
KQVIVRVASKGQIKTYRYVKKQDQK

Nucleotide


Download         Length: 318 bp        

>NTDB_id=839907 VRA41_RS08605 WP_002952035.1 1650129..1650446(-) (comGG) [Streptococcus thermophilus strain SCB0351]
ATGCTTTTGAAAAAACAGGTTAGGGGAGGCGTTCTTCTCTACGCTCTTTTTATGGCTGGCATTTTTACACTCCTTCTTCA
GGTTTATCTGGAACGGGTGGTAGCTAGCTCTAGACAAAACCAAGCGCAAATAGTGGCCAGTCAAAGCCGTCTCATGGCAG
AGATGACTATGGACTTGGTGGATAAGGAAGCAGGTGCTTTTAGTTTTTCTCAGGGGACTACGACTTACGAGGTTAAGGGT
AAGCAAGTGATTGTCAGAGTTGCCAGTAAAGGCCAAATCAAGACCTATCGTTATGTGAAGAAACAAGATCAGAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

45.455

94.286

0.429
  comGG Streptococcus mutans UA159

45.455

94.286

0.429
  comGG/cglG Streptococcus pneumoniae Rx1

42.222

85.714

0.362
  comGG/cglG Streptococcus pneumoniae D39

42.222

85.714

0.362
  comGG/cglG Streptococcus pneumoniae R6

42.222

85.714

0.362
  comGG/cglG Streptococcus pneumoniae TIGR4

42.222

85.714

0.362