Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   JN167_RS07220 Genome accession   NZ_AP024201
Coordinates   1557704..1558774 (-) Length   356 a.a.
NCBI ID   WP_047434565.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain Tokyo13069     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1552704..1563774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN167_RS07180 (TMSFP069_14010) gcvPA 1552881..1554227 (-) 1347 WP_202257174.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  JN167_RS07185 (TMSFP069_14020) gcvT 1554246..1555337 (-) 1092 WP_047526706.1 glycine cleavage system aminomethyltransferase GcvT -
  JN167_RS07190 (TMSFP069_14030) - 1555494..1556018 (-) 525 WP_047526708.1 shikimate kinase -
  JN167_RS07195 (TMSFP069_14040) - 1556005..1556154 (-) 150 WP_072292059.1 hypothetical protein -
  JN167_RS07200 (TMSFP069_14050) comGF 1556253..1556750 (-) 498 WP_072292021.1 competence type IV pilus minor pilin ComGF Machinery gene
  JN167_RS07205 (TMSFP069_14060) comGE 1556668..1556967 (-) 300 WP_000800819.1 hypothetical protein Machinery gene
  JN167_RS07210 (TMSFP069_14070) comGD 1556954..1557400 (-) 447 WP_072292023.1 competence type IV pilus minor pilin ComGD Machinery gene
  JN167_RS07215 (TMSFP069_14080) comGC 1557378..1557689 (-) 312 WP_000921699.1 competence type IV pilus major pilin ComGC Machinery gene
  JN167_RS07220 (TMSFP069_14090) comGB 1557704..1558774 (-) 1071 WP_047434565.1 competence type IV pilus assembly protein ComGB Machinery gene
  JN167_RS07225 (TMSFP069_14100) comGA 1558746..1559720 (-) 975 WP_031787262.1 competence type IV pilus ATPase ComGA Machinery gene
  JN167_RS07230 (TMSFP069_14110) - 1559772..1560395 (-) 624 WP_001222932.1 MBL fold metallo-hydrolase -
  JN167_RS07235 (TMSFP069_14120) - 1560392..1560721 (-) 330 WP_001018874.1 MTH1187 family thiamine-binding protein -
  JN167_RS07240 (TMSFP069_14130) - 1560721..1561707 (-) 987 WP_000161316.1 ROK family glucokinase -
  JN167_RS07245 (TMSFP069_14140) - 1561707..1561907 (-) 201 WP_000087563.1 YqgQ family protein -
  JN167_RS07250 (TMSFP069_14150) - 1561888..1563351 (-) 1464 WP_047526716.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41717.11 Da        Isoelectric Point: 10.1752

>NTDB_id=83972 JN167_RS07220 WP_047434565.1 1557704..1558774(-) (comGB) [Staphylococcus argenteus strain Tokyo13069]
MKVQWISIFKKYSKKRQLNKAQQIELIVNLKNLLQYGFTLYQSFQFLNLQIKYKDKELSSKILSEISNGASCSKILAMLG
YSDTIVMQIYLAERFGNIVDILDETVKFMKINRKSEQRLLKTLQYPLVLVSVFIGMIMMLNITVIPQFQQLYTSMNIKLS
TFQKALSFFISSLPSLILITIFLILILTTSIKLIYNRLTMLYKINFMMKIPILSSYYKLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGEYLLTYSEKGYGLPEILSNLKCFKPQLIKFIQQGEKRGKLEVELRLYSQILVKQIEDKAIR
QTQFIQPILFLILGLFIVAIYLVIMLPMFQMMQSIN

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=83972 JN167_RS07220 WP_047434565.1 1557704..1558774(-) (comGB) [Staphylococcus argenteus strain Tokyo13069]
GTGAAAGTACAATGGATAAGTATATTTAAAAAATATTCTAAGAAACGACAATTAAACAAAGCACAACAAATTGAGCTAAT
TGTAAATTTAAAGAATTTACTACAATATGGGTTCACATTATATCAAAGCTTTCAGTTTCTAAACCTTCAAATTAAATATA
AAGATAAAGAACTATCGTCAAAAATTCTTAGCGAAATTTCGAATGGTGCATCGTGTAGCAAAATACTAGCCATGTTAGGC
TATAGTGATACTATAGTAATGCAAATTTACTTAGCAGAAAGGTTTGGTAATATTGTAGATATCTTAGATGAAACAGTGAA
ATTTATGAAAATAAATAGAAAATCCGAGCAAAGATTATTAAAAACTTTGCAATATCCCTTAGTGTTAGTTTCAGTATTTA
TAGGAATGATTATGATGTTGAATATCACTGTTATTCCACAATTCCAACAACTATATACTTCAATGAATATTAAATTATCA
ACATTTCAAAAAGCACTTTCCTTTTTTATCTCAAGTTTACCCTCGTTAATTTTAATAACAATTTTTCTTATTTTAATTTT
AACCACCTCAATAAAATTAATTTATAACAGGCTAACGATGTTATATAAAATCAACTTTATGATGAAGATACCAATTTTAT
CCAGTTATTATAAGTTGTTCAAAACATATTTTGTTACAAATGAATTAGTTTTATTCTATAAAAATGGTATTACACTTCAA
TCTATCGTTGATGTTTATATCAATCATAGTAGTGATCCATTCAGACAATTTTTAGGTGAATATTTATTAACATATTCAGA
AAAAGGATATGGGTTACCGGAAATTTTATCAAATTTAAAGTGCTTTAAACCACAATTGATAAAGTTTATACAGCAAGGTG
AAAAAAGAGGAAAATTAGAAGTTGAGCTTAGATTATACTCTCAAATTTTAGTGAAACAAATTGAAGATAAAGCGATTCGT
CAAACTCAATTTATACAACCAATTTTATTTTTAATCTTAGGGCTTTTTATTGTTGCAATTTATCTAGTAATAATGCTACC
AATGTTCCAAATGATGCAAAGTATTAATTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(32-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

78.592

99.719

0.784
  comGB Staphylococcus aureus N315

78.592

99.719

0.784

Multiple sequence alignment