Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QUD66_RS18215 Genome accession   NZ_AP027156
Coordinates   3707479..3707946 (+) Length   155 a.a.
NCBI ID   WP_000340170.1    Uniprot ID   -
Organism   Escherichia coli strain JNE181771     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3702479..3712946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUD66_RS18170 (JNE181771_34580) rplP 3702550..3702960 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  QUD66_RS18175 (JNE181771_34590) rpsC 3702973..3703713 (-) 741 WP_053002663.1 30S ribosomal protein S3 -
  QUD66_RS18180 (JNE181771_34600) rplV 3703731..3704063 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  QUD66_RS18185 (JNE181771_34610) rpsS 3704078..3704356 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  QUD66_RS18190 (JNE181771_34620) rplB 3704373..3705194 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  QUD66_RS18195 (JNE181771_34630) rplW 3705212..3705514 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  QUD66_RS18200 (JNE181771_34640) rplD 3705511..3706116 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  QUD66_RS18205 (JNE181771_34650) rplC 3706127..3706756 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  QUD66_RS18210 (JNE181771_34660) rpsJ 3706789..3707100 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  QUD66_RS18215 (JNE181771_34670) pilD 3707479..3707946 (+) 468 WP_000340170.1 A24 family peptidase Machinery gene
  QUD66_RS18220 (JNE181771_34680) bfr 3707943..3708419 (-) 477 WP_000675515.1 bacterioferritin -
  QUD66_RS18225 (JNE181771_34690) bfd 3708492..3708686 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  QUD66_RS18230 (JNE181771_34700) tuf 3708869..3710053 (-) 1185 WP_000031783.1 elongation factor Tu -
  QUD66_RS18235 (JNE181771_34710) fusA 3710124..3712238 (-) 2115 WP_000124700.1 elongation factor G -
  QUD66_RS18240 (JNE181771_34720) rpsG 3712335..3712805 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16934.09 Da        Isoelectric Point: 8.1296

>NTDB_id=83970 QUD66_RS18215 WP_000340170.1 3707479..3707946(+) (pilD) [Escherichia coli strain JNE181771]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWPFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=83970 QUD66_RS18215 WP_000340170.1 3707479..3707946(+) (pilD) [Escherichia coli strain JNE181771]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGCCCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361

Multiple sequence alignment