Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   QPX65_RS12625 Genome accession   NZ_CP126698
Coordinates   2655059..2655676 (+) Length   205 a.a.
NCBI ID   WP_011079558.1    Uniprot ID   Q7MHU7
Organism   Vibrio vulnificus strain VV2018     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2650059..2660676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX65_RS12605 (QPX65_12605) - 2650372..2651295 (-) 924 WP_188011787.1 ABC transporter ATP-binding protein -
  QPX65_RS12610 (QPX65_12610) - 2651462..2653132 (-) 1671 WP_026130631.1 SulP family inorganic anion transporter -
  QPX65_RS12615 (QPX65_12615) can 2653374..2654042 (+) 669 WP_188011786.1 carbonate dehydratase -
  QPX65_RS12620 (QPX65_12620) hpt 2654137..2654667 (-) 531 WP_011079559.1 hypoxanthine phosphoribosyltransferase -
  QPX65_RS12625 (QPX65_12625) opaR 2655059..2655676 (+) 618 WP_011079558.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  QPX65_RS12630 (QPX65_12630) lpdA 2655810..2657237 (-) 1428 WP_011079557.1 dihydrolipoyl dehydrogenase -
  QPX65_RS12635 (QPX65_12635) aceF 2657495..2659375 (-) 1881 WP_243356600.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23717.02 Da        Isoelectric Point: 6.1461

>NTDB_id=839647 QPX65_RS12625 WP_011079558.1 2655059..2655676(+) (opaR) [Vibrio vulnificus strain VV2018]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHAKENIANITNAMIELVVQDNHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHNPE
DLANLFHGICYSLFVQANRTNNTAELSKLVSSYLDMLCIYKREHE

Nucleotide


Download         Length: 618 bp        

>NTDB_id=839647 QPX65_RS12625 WP_011079558.1 2655059..2655676(+) (opaR) [Vibrio vulnificus strain VV2018]
ATGGACTCAATCGCAAAGAGACCGCGAACTCGCTTATCTCCGCTAAAACGTAAACAGCAGCTCATGGAAATTGCACTGGA
AGTGTTTGCTCGTCGTGGCATTGGCCGCGGTGGCCACGCAGACATCGCTGAAATTGCGCAAGTTTCTGTGGCGACCGTCT
TCAACTACTTCCCAACTCGCGAAGATCTTGTAGACGAAGTGCTTAACCATGTCGTTCGTCAGTTTTCTAATTTCCTATCT
GACAACATCGATTTGGATCTTCACGCTAAAGAAAACATCGCCAACATCACCAACGCAATGATTGAGCTTGTGGTGCAAGA
CAATCACTGGTTGAAAGTTTGGTTCGAGTGGAGTGCGTCGACGCGTGATGAAGTTTGGCCTCTGTTTGTCACTACCAACC
GTACTAATCAATTGCTGGTACAAAACATGTTCATCAAAGCCATTGAGCGTGGTGAAGTATGTGACCAACACAACCCAGAA
GATTTGGCGAACTTGTTCCACGGCATTTGTTACTCGCTGTTTGTTCAAGCAAACCGTACCAACAATACCGCAGAGCTCAG
CAAACTGGTCAGCAGCTACTTAGACATGCTATGCATCTATAAACGCGAGCACGAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

92.157

99.512

0.917
  hapR Vibrio cholerae C6706

72.864

97.073

0.707
  hapR Vibrio cholerae strain A1552

72.864

97.073

0.707