Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   QPX65_RS06820 Genome accession   NZ_CP126698
Coordinates   1501329..1502822 (-) Length   497 a.a.
NCBI ID   WP_224641613.1    Uniprot ID   -
Organism   Vibrio vulnificus strain VV2018     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1496329..1507822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX65_RS06805 (QPX65_06805) - 1497727..1498905 (-) 1179 WP_101956930.1 glycosyltransferase family 4 protein -
  QPX65_RS06810 (QPX65_06810) - 1498902..1500095 (-) 1194 WP_206637999.1 glycosyltransferase -
  QPX65_RS06815 (QPX65_06815) - 1500203..1501336 (-) 1134 WP_224641615.1 glycosyltransferase -
  QPX65_RS06820 (QPX65_06820) luxO 1501329..1502822 (-) 1494 WP_224641613.1 sigma-54 dependent transcriptional regulator Regulator
  QPX65_RS06825 (QPX65_06825) - 1502979..1505267 (-) 2289 WP_243344877.1 ATP-binding protein -
  QPX65_RS06830 (QPX65_06830) - 1505291..1506109 (-) 819 WP_285456535.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  QPX65_RS06835 (QPX65_06835) - 1506106..1506798 (-) 693 WP_043877164.1 tyrosine-protein kinase family protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55848.92 Da        Isoelectric Point: 6.6344

>NTDB_id=839643 QPX65_RS06820 WP_224641613.1 1501329..1502822(-) (luxO) [Vibrio vulnificus strain VV2018]
MRAKVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERNTPQLVILDLKLPDMSGEDVLDWINQNDIPTAVIIA
TAHGSVDIAVSLMNKGAEDFLEKPIKADRLKTSIAVHLKRAKLEHLVENMQSRFDRPRYHGFIGACLPMQAVYKTIDSVA
PTTASVFINGESGTGKEVCAEAIHKQSLRKEQPFIAINCGAIPRDLMESEIFGHLKGAFTGATTDRKGAAMLAHGGTLFL
DELCEMELEMQKKLLRFLQTGNFTPLGGSKEVKVDVRIICATNRDPLKEVEEGRFREDLYYRVHVVPIEMPPLRERGNDI
VELANHFLKTYAKEDGKKFNSISKEAQSILKKYNWPGNVRQLQNIIRNIVVLNDDNQLNVEHLPAQLTTKPQTVKEPAKL
STPPQPAQAVIHEMHNGHEALNHHSFERQTSMANPLAHNAFHHSDGSIRPMWQIEREAIQNAIAFCDGNVISAAVMLELS
PSTVYRKKQAWEAEENA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=839643 QPX65_RS06820 WP_224641613.1 1501329..1502822(-) (luxO) [Vibrio vulnificus strain VV2018]
ATGCGAGCAAAAGTACTGTTAGTCGAGGATTCCACTTCACTTGCCATTTTATATAAGCAATACGTCAAAGATGAGCCCTA
TGATATTTTTCACGTAGAAACCGGACGTGACGCGATTCAGTTTATTGAGCGCAATACGCCGCAACTGGTGATTTTGGATC
TCAAGTTGCCCGATATGTCCGGGGAAGATGTGCTCGACTGGATCAACCAAAACGATATTCCGACCGCGGTTATCATCGCC
ACCGCTCATGGTTCCGTTGACATCGCCGTCAGCTTAATGAACAAAGGGGCGGAAGATTTTCTCGAAAAGCCAATCAAAGC
CGACCGTTTAAAAACATCCATTGCCGTTCATCTAAAACGCGCCAAGTTAGAGCATTTGGTTGAGAACATGCAATCTCGCT
TCGACAGACCACGTTATCACGGCTTTATCGGCGCGTGCCTGCCAATGCAGGCCGTTTATAAAACCATTGATTCCGTGGCG
CCAACCACCGCCAGTGTTTTTATTAACGGAGAAAGTGGCACAGGGAAAGAAGTGTGTGCTGAAGCGATACACAAACAGAG
TCTGCGCAAAGAGCAGCCCTTTATCGCAATCAACTGTGGGGCGATTCCTCGTGACTTAATGGAAAGCGAAATCTTTGGTC
ACTTAAAAGGGGCGTTTACCGGAGCGACAACCGATCGCAAAGGTGCAGCAATGCTGGCCCACGGCGGCACGCTATTTCTC
GATGAATTGTGCGAGATGGAACTGGAGATGCAGAAAAAACTGCTGCGTTTTCTTCAGACCGGCAACTTCACCCCACTCGG
CGGCAGTAAAGAAGTCAAGGTGGATGTGCGCATCATCTGCGCCACCAATCGCGATCCCCTCAAAGAGGTCGAAGAAGGCC
GTTTTAGGGAAGATCTCTACTATCGTGTCCATGTGGTTCCCATTGAAATGCCACCACTGAGAGAACGAGGTAATGACATT
GTTGAGCTGGCCAATCACTTCCTCAAAACTTACGCCAAAGAGGACGGCAAAAAATTCAACTCAATCAGCAAAGAAGCTCA
ATCAATACTCAAAAAATACAACTGGCCGGGCAATGTTCGTCAGTTGCAAAACATCATTCGCAACATTGTCGTTCTCAACG
ATGACAACCAACTGAATGTGGAACATTTGCCGGCTCAGCTCACCACCAAACCGCAAACCGTCAAAGAACCCGCTAAACTC
TCAACCCCACCTCAACCTGCTCAAGCGGTCATACACGAGATGCACAACGGACATGAGGCGTTAAACCATCATTCGTTTGA
GAGGCAAACGTCCATGGCCAACCCACTCGCCCACAATGCGTTCCACCATTCTGACGGCAGTATCCGTCCAATGTGGCAAA
TCGAACGCGAAGCGATTCAAAACGCCATCGCCTTTTGCGATGGCAACGTGATCAGTGCAGCGGTGATGCTGGAGCTAAGC
CCCTCGACGGTGTATCGCAAAAAACAAGCGTGGGAGGCAGAAGAAAATGCCTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(451-487)

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(144-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

50.617

97.787

0.495
  pilR Acinetobacter baumannii strain A118

37.423

98.39

0.368