Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QPX68_RS11695 Genome accession   NZ_CP126696
Coordinates   2440325..2440762 (-) Length   145 a.a.
NCBI ID   WP_007612572.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GZY63     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2435325..2445762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX68_RS11645 sinI 2435708..2435881 (+) 174 WP_032874029.1 anti-repressor SinI family protein Regulator
  QPX68_RS11650 sinR 2435915..2436250 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  QPX68_RS11655 - 2436298..2437083 (-) 786 WP_032874027.1 TasA family protein -
  QPX68_RS11660 - 2437148..2437732 (-) 585 WP_032874025.1 signal peptidase I -
  QPX68_RS11665 tapA 2437704..2438375 (-) 672 WP_032874023.1 amyloid fiber anchoring/assembly protein TapA -
  QPX68_RS11670 - 2438634..2438963 (+) 330 WP_032874021.1 DUF3889 domain-containing protein -
  QPX68_RS11675 - 2439004..2439183 (-) 180 WP_022552966.1 YqzE family protein -
  QPX68_RS11680 comGG 2439240..2439617 (-) 378 WP_032874019.1 competence type IV pilus minor pilin ComGG Machinery gene
  QPX68_RS11685 comGF 2439618..2440118 (-) 501 WP_223204419.1 competence type IV pilus minor pilin ComGF -
  QPX68_RS11690 comGE 2440027..2440341 (-) 315 WP_032874016.1 competence type IV pilus minor pilin ComGE Machinery gene
  QPX68_RS11695 comGD 2440325..2440762 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  QPX68_RS11700 comGC 2440752..2441060 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  QPX68_RS11705 comGB 2441065..2442102 (-) 1038 WP_032874014.1 competence type IV pilus assembly protein ComGB Machinery gene
  QPX68_RS11710 comGA 2442089..2443159 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  QPX68_RS11715 - 2443356..2444306 (-) 951 WP_032874012.1 magnesium transporter CorA family protein -
  QPX68_RS11720 - 2444452..2445753 (+) 1302 WP_032874010.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16254.76 Da        Isoelectric Point: 10.1850

>NTDB_id=839575 QPX68_RS11695 WP_007612572.1 2440325..2440762(-) (comGD) [Bacillus amyloliquefaciens strain GZY63]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPVCTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=839575 QPX68_RS11695 WP_007612572.1 2440325..2440762(-) (comGD) [Bacillus amyloliquefaciens strain GZY63]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGTCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCTTTTGATTCGCTTCATATTACACTTGTAACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCAATTGAAGAGCGCCGGGTTCACCTATGAGATAACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

55.479

100

0.559