Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QOM08_RS20195 Genome accession   NZ_CP126693
Coordinates   4508481..4509116 (-) Length   211 a.a.
NCBI ID   WP_177513903.1    Uniprot ID   -
Organism   Pseudomonas sp. P105     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4503481..4514116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM08_RS20160 (QOM08_20140) - 4503869..4504339 (-) 471 WP_047228187.1 (2Fe-2S)-binding protein -
  QOM08_RS20165 (QOM08_20145) murB 4504596..4505615 (-) 1020 WP_047228186.1 UDP-N-acetylmuramate dehydrogenase -
  QOM08_RS20170 (QOM08_20150) - 4505612..4506076 (-) 465 WP_092400061.1 low molecular weight protein-tyrosine-phosphatase -
  QOM08_RS20175 (QOM08_20155) kdsB 4506076..4506840 (-) 765 WP_076383826.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QOM08_RS20180 (QOM08_20160) - 4506837..4507022 (-) 186 WP_003179363.1 Trm112 family protein -
  QOM08_RS20185 (QOM08_20165) lpxK 4507046..4508056 (-) 1011 WP_076383825.1 tetraacyldisaccharide 4'-kinase -
  QOM08_RS20190 (QOM08_20170) - 4508056..4508484 (-) 429 WP_047228182.1 ExbD/TolR family protein -
  QOM08_RS20195 (QOM08_20175) exbB 4508481..4509116 (-) 636 WP_177513903.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QOM08_RS20200 (QOM08_20180) comA 4509219..4511459 (-) 2241 WP_188252039.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QOM08_RS20205 (QOM08_20185) - 4511605..4512120 (+) 516 WP_047228179.1 DUF2062 domain-containing protein -
  QOM08_RS20210 (QOM08_20190) - 4512221..4513000 (-) 780 WP_047228178.1 ABC transporter permease -
  QOM08_RS20215 (QOM08_20195) - 4512997..4513929 (-) 933 WP_047228177.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22939.12 Da        Isoelectric Point: 8.0841

>NTDB_id=839484 QOM08_RS20195 WP_177513903.1 4508481..4509116(-) (exbB) [Pseudomonas sp. P105]
MWELVKSGGWMMLPIILSSIVALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKKLNKDRLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFTGAGMTANASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=839484 QOM08_RS20195 WP_177513903.1 4508481..4509116(-) (exbB) [Pseudomonas sp. P105]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGTGGCGCTGGGAATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGAAACTGAACAAGGACCGGCTCAAGGAGCTGCGGGCCAGTTCACCGCTGGGTGAAATCCTCGCCGCGGGGCTGGCAAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCCCGGGTCATCCATGAGCTGGAACGCTACAT
CAATGCCCTGGGCACAATTGCCGCCATGGCTCCGTTGCTGGGCCTGCTGGGCACGGTGCTGGGCATGATCGACATTTTCA
GTTCGTTCACCGGCGCCGGCATGACCGCCAACGCCTCGGTGCTGGCAGGGGGGATTTCCAAGGCCTTGATCACCACGGCC
GCCGGGTTGATGGTGGGGATTCCTTCGGTGTTTTTCCATCGCTTCCTGCAACGGCGCATCGATGAATTGGTGGTGGGCAT
GGAGCAGGAGGCCATCAAGCTGGTCGAGGTGGTGCAAGGCGACCGTGACGTGGACCTGGCCGAGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.286

99.526

0.839