Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QOM08_RS20200 Genome accession   NZ_CP126693
Coordinates   4509219..4511459 (-) Length   746 a.a.
NCBI ID   WP_188252039.1    Uniprot ID   A0AA96XVK0
Organism   Pseudomonas sp. P105     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4504219..4516459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM08_RS20165 (QOM08_20145) murB 4504596..4505615 (-) 1020 WP_047228186.1 UDP-N-acetylmuramate dehydrogenase -
  QOM08_RS20170 (QOM08_20150) - 4505612..4506076 (-) 465 WP_092400061.1 low molecular weight protein-tyrosine-phosphatase -
  QOM08_RS20175 (QOM08_20155) kdsB 4506076..4506840 (-) 765 WP_076383826.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QOM08_RS20180 (QOM08_20160) - 4506837..4507022 (-) 186 WP_003179363.1 Trm112 family protein -
  QOM08_RS20185 (QOM08_20165) lpxK 4507046..4508056 (-) 1011 WP_076383825.1 tetraacyldisaccharide 4'-kinase -
  QOM08_RS20190 (QOM08_20170) - 4508056..4508484 (-) 429 WP_047228182.1 ExbD/TolR family protein -
  QOM08_RS20195 (QOM08_20175) exbB 4508481..4509116 (-) 636 WP_177513903.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QOM08_RS20200 (QOM08_20180) comA 4509219..4511459 (-) 2241 WP_188252039.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QOM08_RS20205 (QOM08_20185) - 4511605..4512120 (+) 516 WP_047228179.1 DUF2062 domain-containing protein -
  QOM08_RS20210 (QOM08_20190) - 4512221..4513000 (-) 780 WP_047228178.1 ABC transporter permease -
  QOM08_RS20215 (QOM08_20195) - 4512997..4513929 (-) 933 WP_047228177.1 ABC transporter ATP-binding protein -
  QOM08_RS20220 (QOM08_20200) - 4514063..4514686 (-) 624 WP_047228176.1 glutathione S-transferase family protein -
  QOM08_RS20225 (QOM08_20205) - 4514732..4515391 (-) 660 WP_316912049.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 80858.00 Da        Isoelectric Point: 9.8401

>NTDB_id=839485 QOM08_RS20200 WP_188252039.1 4509219..4511459(-) (comA) [Pseudomonas sp. P105]
MRTGMVALALGLLTPVFCPALPPLWLIAVMPVLALMVLPFRTHPLGFFLIGLAWACLSAQLALDDRLPAALDGETRWVEG
RVVGLPQYNEGVVRFELADAHSRRTRLPSSMRLAWFGGPPVSSGERWRLAVKLKRPTGLLNPNGFDYQAWLLSRGIGATG
TVKDGHLQQPAQGAWRDGVRQALAQVDAQGRSGALAALVLGDGAGLSRDDWQVLQDTGTVHLLVISGQHIGLLAALVYLL
VAGAARYGMWPVRLPWLPWACALAFIAALGYGLLAGFEVPVRRACAMIGLVLLWRLRYRHPDPWWAWLLAFNGVLVFDPL
ASLRPGFWLSFAAVAILMFTFGARLGPWRWWQTWTRAQWLVAVGLCPILLILGLPISLSGPLVNLVAVPWVSLLVLPPAL
LGTALLPVPFVGEGLLWIAGGLLDLLFKGLALVAGRIPAWVPAAIPVWAWCMAALGALLLLLPKGLPLRVLGWPMLLLVV
FPPREDVPPGQAEIWQLDVGQGLAVLVRTRHHALLYDAGPRFGEADAGERVVLPTLRKLGVAGLDLMLLSHADADHAGGA
QAVRNGLPTVRVVSGDPAALPAALQAEACDSGARWEWDGVRFELWQWSSALESNQRSCVLLVEAGGERLLLTGDIDSHAE
RALLDGPLAVPVQWLAAPHHGSRSSSSMLLLSRLKPHSVLISRGQGNAFGHPHPRVLARYRRLGMAIYDSAEQGAIRLQL
GAFEAPRLQAGQRRYWRDPPSAGPWP

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=839485 QOM08_RS20200 WP_188252039.1 4509219..4511459(-) (comA) [Pseudomonas sp. P105]
ATGCGCACAGGGATGGTCGCGCTTGCACTCGGGCTGCTGACCCCGGTTTTTTGCCCGGCGCTGCCGCCGCTGTGGCTGAT
TGCGGTCATGCCTGTGCTGGCGCTGATGGTTTTGCCGTTTCGGACTCATCCGCTGGGTTTTTTCCTGATCGGGCTGGCTT
GGGCGTGTCTGTCGGCGCAACTGGCCCTGGACGATCGGTTGCCCGCCGCGCTGGATGGAGAAACCCGCTGGGTCGAAGGG
CGCGTCGTCGGTTTACCGCAATATAACGAAGGTGTGGTGCGCTTTGAACTGGCCGATGCCCATTCCCGCCGCACACGGCT
GCCGTCGTCGATGCGCCTGGCCTGGTTCGGTGGACCGCCTGTGAGCAGCGGCGAACGTTGGCGATTGGCGGTAAAGCTCA
AACGCCCCACCGGGCTACTGAACCCCAATGGCTTCGATTACCAGGCCTGGCTGTTGAGCCGCGGCATCGGCGCGACTGGC
ACGGTCAAGGACGGTCATCTCCAGCAACCTGCCCAAGGTGCCTGGCGCGACGGCGTGCGTCAGGCGCTGGCGCAAGTCGA
CGCCCAGGGCCGCTCCGGGGCGCTGGCGGCATTGGTCCTGGGGGACGGAGCTGGGTTGAGTCGTGATGACTGGCAGGTAC
TGCAGGACACCGGTACGGTCCATCTGCTGGTGATCTCCGGGCAGCACATCGGCCTGCTTGCCGCACTGGTGTACCTGCTG
GTGGCAGGTGCGGCGCGCTATGGCATGTGGCCGGTGCGTCTGCCGTGGCTACCTTGGGCCTGCGCTCTGGCCTTTATCGC
AGCCTTGGGTTACGGCTTGCTCGCCGGCTTCGAGGTGCCGGTGCGGCGCGCTTGCGCGATGATCGGCCTGGTGCTGCTGT
GGCGTTTGCGTTACCGGCATCCGGACCCCTGGTGGGCGTGGCTGCTGGCTTTCAATGGGGTGCTGGTGTTCGATCCATTG
GCCAGCCTGCGGCCAGGGTTCTGGCTGTCGTTCGCCGCGGTGGCGATCCTGATGTTTACTTTCGGCGCACGCTTGGGGCC
CTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAATGGCTGGTGGCAGTCGGACTGTGCCCGATCCTGTTGATATTGGGTT
TGCCGATCAGCCTCAGCGGGCCTCTGGTGAACCTGGTGGCGGTGCCTTGGGTCAGCCTGCTGGTGTTGCCGCCGGCGCTG
CTCGGTACGGCGTTGTTGCCGGTGCCGTTCGTGGGCGAAGGGCTGCTTTGGATCGCCGGCGGGTTGCTCGATCTGCTCTT
CAAGGGGTTGGCGCTGGTGGCGGGACGAATACCGGCATGGGTGCCTGCGGCTATCCCCGTATGGGCATGGTGCATGGCCG
CTCTGGGGGCTTTGTTACTGTTGCTGCCCAAAGGCCTACCACTGCGGGTACTGGGATGGCCCATGTTGCTGCTGGTGGTT
TTCCCTCCGAGGGAGGATGTGCCCCCGGGGCAAGCCGAAATCTGGCAACTGGACGTGGGTCAAGGGTTGGCGGTGCTGGT
ACGCACCCGTCATCATGCCTTGCTTTACGACGCGGGGCCGCGCTTTGGCGAGGCCGACGCGGGTGAGCGCGTGGTGCTGC
CGACCCTGCGCAAGCTGGGCGTCGCCGGGTTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGCGGCGCC
CAAGCGGTGCGCAATGGCTTGCCAACGGTCCGGGTGGTCAGTGGCGACCCCGCCGCGTTGCCTGCCGCTTTGCAGGCAGA
GGCGTGCGACAGTGGCGCGCGCTGGGAGTGGGACGGGGTCAGGTTCGAGCTGTGGCAATGGTCATCTGCCCTTGAAAGCA
ATCAGAGATCCTGCGTTCTGCTGGTCGAGGCCGGCGGTGAGCGGTTGCTGCTCACCGGCGACATCGATAGCCATGCCGAG
CGCGCGTTGCTCGACGGGCCCCTGGCAGTGCCGGTCCAGTGGCTGGCGGCGCCCCATCACGGTAGCCGCAGTTCATCCTC
GATGTTGCTGTTGTCGAGGCTCAAACCCCATTCGGTGTTGATCTCCCGCGGCCAGGGCAATGCGTTCGGCCATCCTCATC
CGCGGGTGCTGGCTCGCTATCGCCGCTTGGGCATGGCGATCTACGACAGTGCCGAACAGGGTGCCATTCGTCTGCAACTG
GGGGCTTTCGAAGCACCGCGCCTTCAGGCCGGCCAACGGCGCTACTGGCGCGACCCGCCGTCTGCGGGACCATGGCCGTA
A

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-667)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(22-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.313

95.979

0.588