Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   QOM08_RS03895 Genome accession   NZ_CP126693
Coordinates   901820..903412 (-) Length   530 a.a.
NCBI ID   WP_281459547.1    Uniprot ID   -
Organism   Pseudomonas sp. P105     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 896820..908412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM08_RS03880 (QOM08_03875) thiO 897105..898205 (+) 1101 WP_047230179.1 glycine oxidase ThiO -
  QOM08_RS03885 (QOM08_03880) - 900015..900380 (+) 366 WP_139051190.1 DUF6124 family protein -
  QOM08_RS03890 (QOM08_03885) pilR 900477..901823 (-) 1347 WP_316912582.1 sigma-54 dependent transcriptional regulator Regulator
  QOM08_RS03895 (QOM08_03890) pilS 901820..903412 (-) 1593 WP_281459547.1 two-component system sensor histidine kinase NtrB Regulator
  QOM08_RS03900 (QOM08_03895) - 903402..903635 (-) 234 WP_047229875.1 PP0621 family protein -
  QOM08_RS03905 (QOM08_03900) - 903759..904775 (-) 1017 WP_047229874.1 outer membrane protein assembly factor BamD -
  QOM08_RS03910 (QOM08_03905) rluD 904927..905889 (+) 963 WP_047229873.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QOM08_RS03915 (QOM08_03910) pgeF 905886..906611 (+) 726 WP_316912583.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58930.77 Da        Isoelectric Point: 7.2517

>NTDB_id=839470 QOM08_RS03895 WP_281459547.1 901820..903412(-) (pilS) [Pseudomonas sp. P105]
MTAEQASSPRVKQAQRLLRLYHLYRLSIGITLVLLISSNMDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPARL
FGLALTDVLLLSWLFYAAGGAPSAIGNLLIVSVAIGNTLLRGRIGLLIAAVATLGIVGSSFFLDLSDSSRPSSYLQAGTL
GALCFAAALLVQGLTRRLEASEILAEQRASEVVGLEALNALILQRMRTGILVLDRQRRVQLANESALNLLGMHDLVGQRL
DDCSGALVERLQLWLNNPSLRPQSLTINGTGLTLQPSFIALGHHDQHQILVFLEDLAQVAQHAQQLKLASLGRLTAGIAH
EIRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRIWLDQFVRQARENAAG
HQHLHLSIDPGDYLTLMDPDQLTQVLDNLLRNAWRHSAMAHEEAEVWLKLFIDPHSQLSMLDIIDNGPGVTPDQQAHLFE
PFFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=839470 QOM08_RS03895 WP_281459547.1 901820..903412(-) (pilS) [Pseudomonas sp. P105]
GTGACCGCTGAGCAAGCCTCAAGCCCTCGCGTCAAACAGGCGCAGCGCCTGCTGCGTCTCTATCACCTGTACCGTCTAAG
CATCGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGGAGTTCGCCAACGACGATTTGCTGC
GCAGCGGCAGCTGGTTGTACCTGGTGCTGAATATCCTGCTGGTGGTGTTTCTTGAAAATACCCGCCGCCCAGCCCGGCTG
TTCGGCCTGGCTCTGACCGACGTGCTGTTGTTGTCGTGGCTGTTCTACGCTGCCGGCGGCGCCCCCAGCGCCATCGGCAA
CCTGCTCATCGTCTCGGTGGCCATCGGCAATACGTTGTTGCGAGGCCGAATCGGCCTGTTGATTGCCGCTGTCGCCACGC
TGGGCATCGTCGGATCGAGCTTCTTCCTTGACCTCAGCGATTCGAGCCGTCCCAGCAGTTATCTGCAGGCCGGTACCCTG
GGGGCCTTGTGTTTTGCCGCCGCGCTGCTGGTGCAAGGCCTGACCCGACGCCTGGAAGCCAGTGAAATCCTCGCCGAACA
ACGGGCCAGCGAAGTAGTCGGTCTGGAAGCGCTCAACGCACTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCG
ATCGCCAGCGCCGGGTGCAATTGGCTAACGAAAGCGCATTGAACCTGTTGGGCATGCACGACCTGGTCGGCCAGCGGCTC
GACGACTGCTCCGGCGCCCTGGTGGAGCGGCTACAGCTGTGGTTGAACAACCCCAGCCTGCGTCCGCAAAGCCTGACCAT
TAACGGTACCGGCCTGACCTTGCAACCGAGTTTCATTGCCCTGGGGCATCACGATCAGCATCAGATCCTGGTCTTCCTCG
AAGACCTGGCCCAAGTGGCCCAGCACGCCCAGCAGTTGAAACTCGCCTCCCTGGGGCGCCTCACCGCCGGTATCGCCCAT
GAAATCCGCAACCCGTTGGGGGCGATCAGCCATGCGGCGCAATTGCTGCGCGAGTCCGAGGAACTGAACGACGCAGATCG
GCGTCTGACGCAGATCATCCAGGATCACTCCCAACGAATGAACCGCGTCATTGAAAACGTCCTGCAACTGTCCCGCCGCC
AGCAGACCACGCCGCAGCGCCTGGATCTGCGGATCTGGCTCGACCAGTTCGTCCGACAGGCCCGGGAAAACGCGGCTGGG
CATCAGCACTTGCACCTGAGCATCGACCCGGGTGACTACCTCACGCTGATGGACCCCGATCAGTTGACCCAGGTGCTCGA
CAACCTGCTGCGCAACGCCTGGCGTCACAGCGCGATGGCCCATGAAGAGGCCGAGGTCTGGCTGAAGCTGTTCATCGATC
CCCACAGCCAGCTGTCCATGCTGGACATTATCGACAATGGCCCCGGCGTGACGCCGGACCAGCAAGCGCATTTGTTCGAA
CCTTTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCG
CCTAGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACTTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(310-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.618

97.736

0.592