Detailed information NTG0839469

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QOM08_RS03890
• Genome accession: NZ_CP126693
• Coordinates: 900477..901823 (-)
• Length: 448 a.a.
• NCBI ID: WP_316912582.1
• Uniprot ID: -
• Organism: Pseudomonas sp. P105
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 895477..906823

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QOM08_RS03875 (QOM08_03870)	-	896648..897049 (+)	402	WP_076386375.1	type IV pilin protein	-
QOM08_RS03880 (QOM08_03875)	thiO	897105..898205 (+)	1101	WP_047230179.1	glycine oxidase ThiO	-
QOM08_RS03885 (QOM08_03880)	-	900015..900380 (+)	366	WP_139051190.1	DUF6124 family protein	-
QOM08_RS03890 (QOM08_03885)	pilR	900477..901823 (-)	1347	WP_316912582.1	sigma-54 dependent transcriptional regulator	Regulator
QOM08_RS03895 (QOM08_03890)	pilS	901820..903412 (-)	1593	WP_281459547.1	two-component system sensor histidine kinase NtrB	Regulator
QOM08_RS03900 (QOM08_03895)	-	903402..903635 (-)	234	WP_047229875.1	PP0621 family protein	-
QOM08_RS03905 (QOM08_03900)	-	903759..904775 (-)	1017	WP_047229874.1	outer membrane protein assembly factor BamD	-
QOM08_RS03910 (QOM08_03905)	rluD	904927..905889 (+)	963	WP_047229873.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
QOM08_RS03915 (QOM08_03910)	pgeF	905886..906611 (+)	726	WP_316912583.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50249.68 Da
• Isoelectric Point: 6.2595

>NTDB_id=839469 QOM08_RS03890 WP_316912582.1 900477..901823(-) (pilR) [Pseudomonas sp. P105]
MTTRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAENLAQARALLAEDTFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPSVAIPAASIERCLLGDSPPMHNVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRSAQRFVPVNCGAIPTELMESEFFGYRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVTAGRFRQDLYYRLNVIELRVPPLRERREDIESLA
NHTLQRLAANTGSPAVKLHPQALDALRNYRFPGNVRELENMLERAYTLCEHQLIEAHDLRLAEGISTTDAGSPDLMRVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=839469 QOM08_RS03890 WP_316912582.1 900477..901823(-) (pilR) [Pseudomonas sp. P105]
TTGACTACGCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATTACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCGAGAACCTTGCCCAGGCCCGGGCCCTGCTGGCTGAAGACACCTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACTGGCCTGGAGCTGGTGCAACATATCCAGCAACGCTACCCGCAATTGCCC
GTGGCAATGATCACCGCCTACGGGAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGGCTGCGTGAGCTGGTCACCAGCGCATTACGCCTGCCGTCGGTCGCCATCCCGGCGGCGTCCA
TCGAGCGCTGTCTGCTGGGCGATTCCCCGCCGATGCACAACGTCCGCAAACAGATCGAAAAACTCGCTCGCAGTCAGGCG
CCGGTCTACATCAGCGGGGAATCGGGTTGCGGCAAGGAACTGGTCGCCCGGTTGATCCATGAGCAAGGCCCGCGTTCCGC
CCAGCGTTTTGTGCCGGTCAACTGTGGGGCGATTCCCACGGAGCTGATGGAAAGCGAGTTTTTCGGCTATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAACCCGGACTGTTCCAGGCCGCTCACGGCGGGACCTTGTTCCTTGACGAAGTGGCC
GACCTGCCCCTGGCGATGCAAGTCAAATTGCTGCGGGCCATCCAGGAAAAAGCCGTGCGGGCCGTTGGTGGCCAGCAGGA
AGAAGTGGTGGATGTACGAATTCTTTGCGCCACCCACAAGGACCTGGACGCCGAAGTCACCGCCGGGCGCTTTCGCCAGG
ACCTGTACTATCGACTCAACGTCATCGAACTGCGCGTCCCGCCGCTGCGCGAACGCCGCGAAGACATCGAATCGCTCGCC
AATCACACCCTCCAGCGCCTGGCCGCCAACACCGGCAGCCCCGCGGTCAAGCTCCATCCCCAAGCCCTGGACGCCCTTCG
AAACTACCGCTTCCCGGGCAATGTTCGGGAACTGGAAAACATGCTCGAACGCGCCTACACCCTTTGCGAGCACCAGTTGA
TCGAAGCCCACGACCTGCGCCTGGCCGAGGGCATCAGCACCACCGACGCAGGCAGCCCCGACCTGATGCGGGTCGATAAC
CTGGAAGACTATCTGGAGGACGTCGAACGCAAACTCATCCTCCAGGCTTTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCCCAACGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.378	99.107	0.777
pilR	Acinetobacter baumannii strain A118	49.673	100	0.509