Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   VJY30_RS06365 Genome accession   NZ_CP142035
Coordinates   1305862..1307523 (-) Length   553 a.a.
NCBI ID   WP_000880914.1    Uniprot ID   -
Organism   Escherichia coli strain HS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1300862..1312523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJY30_RS06325 (VJY30_06325) - 1300989..1302089 (+) 1101 WP_233321741.1 phage late control D family protein -
  VJY30_RS06330 (VJY30_06330) - 1302158..1302373 (+) 216 WP_000980504.1 ogr/Delta-like zinc finger family protein -
  VJY30_RS06335 (VJY30_06335) - 1302476..1303189 (-) 714 WP_000347141.1 hypothetical protein -
  VJY30_RS06345 (VJY30_06345) smpB 1303940..1304422 (-) 483 WP_000162574.1 SsrA-binding protein SmpB -
  VJY30_RS06350 (VJY30_06350) ratA 1304593..1305030 (+) 438 WP_024175760.1 type II toxin-antitoxin system toxin RatA -
  VJY30_RS06355 (VJY30_06355) yfjF 1305020..1305310 (+) 291 WP_001117840.1 RnfH family protein -
  VJY30_RS06360 (VJY30_06360) bamE 1305372..1305713 (-) 342 WP_001203436.1 outer membrane protein assembly factor BamE -
  VJY30_RS06365 (VJY30_06365) recN 1305862..1307523 (-) 1662 WP_000880914.1 DNA repair protein RecN Machinery gene
  VJY30_RS06370 (VJY30_06370) nadK 1307609..1308487 (-) 879 WP_001059146.1 NAD(+) kinase -
  VJY30_RS06375 (VJY30_06375) grpE 1308610..1309200 (+) 591 WP_012311718.1 nucleotide exchange factor GrpE -
  VJY30_RS06380 (VJY30_06380) - 1309235..1309840 (-) 606 WP_001287889.1 DUF6630 family protein -
  VJY30_RS06385 (VJY30_06385) yfjD 1309964..1311250 (-) 1287 WP_010723175.1 HlyC/CorC family transporter -
  VJY30_RS06390 (VJY30_06390) ypjD 1311271..1312062 (-) 792 WP_001338897.1 cytochrome C assembly family protein -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 61353.29 Da        Isoelectric Point: 5.1819

>NTDB_id=839448 VJY30_RS06365 WP_000880914.1 1305862..1307523(-) (recN) [Escherichia coli strain HS4]
MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRAEADMVRTGAARADLCARFSLKDTPAALRWL
EENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT
ARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNALALMADGEDA
NLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDRLDLDPNRLFELEQRISKQISLARKHHVSPE
ALPQYYQSLLEEQQQLDDQADSQETLALAVTKHHQQALETANALHQQRQHYAEELAQLITDSMHALSMPHGQFTIDVKFD
EHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL
GESTQVMCVTHLPQVAGCGHQHYFVSKETDGAMTETHMESLDKKARLQELARLLGGSEVTRNTLANAKELLAA

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=839448 VJY30_RS06365 WP_000880914.1 1305862..1307523(-) (recN) [Escherichia coli strain HS4]
ATGTTGGCACAACTGACCATCAGCAACTTTGCTATCGTTCGTGAGCTTGAGATTGATTTTCATAGCGGCATGACCGTAAT
AACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGTCTTTGTCTCGGTGGTCGCGCTGAAGCCGACA
TGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGAAAGATACGCCAGCGGCCCTGCGCTGGCTG
GAAGAAAACCAGCTTGAAGACGGGCATGAATGTTTGCTTCGTCGCGTAATCAGCAGCGATGGTCGCTCCCGTGGTTTTAT
CAACGGTACAGCGGTTCCTCTTTCACAACTGCGCGAACTGGGTCAGTTGCTGATTCAGATCCATGGTCAGCACGCTCATC
AGTTACTCACCAAACCCGAGCACCAAAAATTCCTGCTTGATGGCTATGCCAATGAAACCTCTCTACTCCAGGAAATGACC
GCACGTTATCAGTTGTGGCATCAAAGCTGCCGTGACCTCGCGCATCATCAACAGTTAAGTCAGGAACGCGCCGCCCGTGC
AGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAGCAAATCGACGAAGAGT
ACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATGGCCGACGGTGAAGACGCA
AACCTGCAAAGTCAGCTTTACACGGCTAAACAACTGGTGAGCGAATTGATTGGCATGGACAGCAAACTGTCCGGCGTACT
TGATATGCTGGAAGAAGCTACCATCCAGATTGCTGAAGCCAGCGATGAACTGCGCCACTACTGCGATCGTCTGGACCTCG
ATCCTAACCGACTGTTTGAACTTGAACAGCGCATCTCAAAACAGATTTCGCTGGCACGTAAACATCACGTCAGCCCTGAG
GCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGATCAGGCCGACTCACAAGAAACGCTCGC
GCTGGCGGTAACGAAACATCATCAGCAGGCACTGGAAACCGCGAACGCATTACACCAGCAACGCCAGCACTATGCAGAAG
AACTTGCACAGCTGATCACCGACAGTATGCATGCACTCTCTATGCCGCATGGGCAGTTTACGATTGATGTTAAATTTGAC
GAGCATCACCTGGGCGCTGACGGCGCTGATCGTATTGAATTTCGGGTAACCACCAACCCAGGTCAGCCAATGCAGCCTAT
TGCCAAAGTCGCATCCGGTGGTGAATTGTCACGCATCGCATTGGCAATTCAGGTCATCACGGCGCGTAAAATGGAAACCC
CGGCACTGATTTTTGATGAAGTGGATGTAGGGATTAGCGGCCCAACAGCGGCAGTTGTTGGCAAACTGCTGCGTCAACTC
GGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAA
AGAAACCGATGGTGCGATGACAGAAACGCATATGGAGTCGCTGGACAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGC
TTGGTGGCAGTGAAGTCACACGTAACACACTGGCGAATGCGAAAGAACTGCTTGCGGCGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

37.975

100

0.38
  recN Bacillus subtilis subsp. subtilis str. 168

35.192

100

0.365