Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QPR37_RS08975 Genome accession   NZ_CP126631
Coordinates   1794137..1794823 (+) Length   228 a.a.
NCBI ID   WP_078316624.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 33-40     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1789137..1799823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPR37_RS08940 (QPR37_08940) yqeH 1789664..1790764 (+) 1101 WP_259378644.1 ribosome biogenesis GTPase YqeH -
  QPR37_RS08945 (QPR37_08945) aroE 1790778..1791584 (+) 807 WP_285146788.1 shikimate dehydrogenase -
  QPR37_RS08950 (QPR37_08950) yhbY 1791588..1791878 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  QPR37_RS08955 (QPR37_08955) nadD 1791881..1792450 (+) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  QPR37_RS08960 (QPR37_08960) yqeK 1792440..1793024 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QPR37_RS08965 (QPR37_08965) rsfS 1793025..1793378 (+) 354 WP_001088020.1 ribosome silencing factor -
  QPR37_RS08970 (QPR37_08970) - 1793381..1794097 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  QPR37_RS08975 (QPR37_08975) comEA 1794137..1794823 (+) 687 WP_078316624.1 ComEA family DNA-binding protein Machinery gene
  QPR37_RS08980 (QPR37_08980) - 1794915..1795376 (+) 462 WP_000439693.1 ComE operon protein 2 -
  QPR37_RS08985 (QPR37_08985) comEC 1795381..1797582 (+) 2202 WP_259378642.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QPR37_RS08990 (QPR37_08990) holA 1797639..1798613 (+) 975 WP_001282572.1 DNA polymerase III subunit delta -
  QPR37_RS08995 (QPR37_08995) rpsT 1798658..1798909 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25629.38 Da        Isoelectric Point: 9.5413

>NTDB_id=839327 QPR37_RS08975 WP_078316624.1 1794137..1794823(+) (comEA) [Staphylococcus aureus strain 33-40]
MVLLYQFLLRYKDFLTQCKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSEISSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLSDQKMILIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=839327 QPR37_RS08975 WP_078316624.1 1794137..1794823(+) (comEA) [Staphylococcus aureus strain 33-40]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGCAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAATTAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTATCAGATC
AAAAAATGATTTTAATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.916

99.561

0.965
  comEA Staphylococcus aureus N315

96.916

99.561

0.965