Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QPR37_RS00400 Genome accession   NZ_CP126631
Coordinates   82685..83254 (-) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 33-40     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 77685..88254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPR37_RS00360 (QPR37_00360) - 78162..78770 (-) 609 WP_063651705.1 class I SAM-dependent methyltransferase -
  QPR37_RS00365 (QPR37_00365) rplL 78945..79313 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QPR37_RS00370 (QPR37_00370) rplJ 79356..79856 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  QPR37_RS00375 (QPR37_00375) rplA 80128..80820 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  QPR37_RS00380 (QPR37_00380) rplK 81028..81450 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  QPR37_RS00385 (QPR37_00385) nusG 81631..82176 (-) 546 WP_001288304.1 transcription termination/antitermination protein NusG -
  QPR37_RS00390 (QPR37_00390) secE 82189..82371 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  QPR37_RS00395 (QPR37_00395) rpmG 82427..82570 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  QPR37_RS00400 (QPR37_00400) sigH 82685..83254 (-) 570 WP_000872876.1 RNA polymerase sigma factor Regulator
  QPR37_RS00405 (QPR37_00405) - 83335..83859 (-) 525 WP_000664738.1 NYN domain-containing protein -
  QPR37_RS00410 (QPR37_00410) rlmB 83859..84605 (-) 747 WP_000390331.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QPR37_RS00415 (QPR37_00415) - 84613..85017 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  QPR37_RS00420 (QPR37_00420) cysS 85010..86410 (-) 1401 WP_141060122.1 cysteine--tRNA ligase -
  QPR37_RS00425 (QPR37_00425) cysE 86394..87041 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=839307 QPR37_RS00400 WP_000872876.1 82685..83254(-) (sigH) [Staphylococcus aureus strain 33-40]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=839307 QPR37_RS00400 WP_000872876.1 82685..83254(-) (sigH) [Staphylococcus aureus strain 33-40]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTGGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGCGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984