Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QPL68_RS12400 Genome accession   NZ_CP126629
Coordinates   2555482..2555877 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 35-42     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2550482..2560877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL68_RS12370 (QPL68_12370) - 2551685..2552089 (+) 405 WP_063652320.1 F0F1 ATP synthase subunit epsilon -
  QPL68_RS12375 (QPL68_12375) - 2552499..2552576 (+) 78 Protein_2401 hypothetical protein -
  QPL68_RS12380 (QPL68_12380) - 2552708..2552941 (+) 234 WP_000384523.1 DUF1146 family protein -
  QPL68_RS12385 (QPL68_12385) murA 2553052..2554317 (+) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QPL68_RS12390 (QPL68_12390) fabZ 2554351..2554791 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QPL68_RS12395 (QPL68_12395) - 2554848..2555288 (-) 441 WP_000846746.1 YwpF-like family protein -
  QPL68_RS12400 (QPL68_12400) ssb 2555482..2555877 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QPL68_RS12405 (QPL68_12405) sceD 2556266..2556961 (+) 696 WP_063652322.1 lytic transglycosylase SceD -
  QPL68_RS12410 (QPL68_12410) tenA 2557348..2558037 (+) 690 WP_063652324.1 thiaminase II -
  QPL68_RS12415 (QPL68_12415) thiD 2558030..2558860 (+) 831 WP_063652326.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QPL68_RS12420 (QPL68_12420) thiM 2558844..2559635 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  QPL68_RS12425 (QPL68_12425) thiE 2559637..2560278 (+) 642 WP_063652329.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=839303 QPL68_RS12400 WP_000932694.1 2555482..2555877(+) (ssb) [Staphylococcus aureus strain 35-42]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=839303 QPL68_RS12400 WP_000932694.1 2555482..2555877(+) (ssb) [Staphylococcus aureus strain 35-42]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992