Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QPL68_RS06650 Genome accession   NZ_CP126629
Coordinates   1363606..1364175 (-) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 35-42     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1358606..1369175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL68_RS06610 (QPL68_06610) - 1359083..1359691 (-) 609 WP_063651705.1 class I SAM-dependent methyltransferase -
  QPL68_RS06615 (QPL68_06615) rplL 1359866..1360234 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QPL68_RS06620 (QPL68_06620) rplJ 1360277..1360777 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  QPL68_RS06625 (QPL68_06625) rplA 1361049..1361741 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  QPL68_RS06630 (QPL68_06630) rplK 1361949..1362371 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  QPL68_RS06635 (QPL68_06635) nusG 1362552..1363097 (-) 546 WP_001288304.1 transcription termination/antitermination protein NusG -
  QPL68_RS06640 (QPL68_06640) secE 1363110..1363292 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  QPL68_RS06645 (QPL68_06645) rpmG 1363348..1363491 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  QPL68_RS06650 (QPL68_06650) sigH 1363606..1364175 (-) 570 WP_000872876.1 RNA polymerase sigma factor Regulator
  QPL68_RS06655 (QPL68_06655) - 1364256..1364780 (-) 525 WP_000664738.1 NYN domain-containing protein -
  QPL68_RS06660 (QPL68_06660) rlmB 1364780..1365526 (-) 747 WP_000390331.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QPL68_RS06665 (QPL68_06665) - 1365534..1365938 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  QPL68_RS06670 (QPL68_06670) cysS 1365931..1367331 (-) 1401 WP_141060122.1 cysteine--tRNA ligase -
  QPL68_RS06675 (QPL68_06675) cysE 1367315..1367962 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=839293 QPL68_RS06650 WP_000872876.1 1363606..1364175(-) (sigH) [Staphylococcus aureus strain 35-42]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=839293 QPL68_RS06650 WP_000872876.1 1363606..1364175(-) (sigH) [Staphylococcus aureus strain 35-42]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTGGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGCGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984