Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   VOI49_RS07815 Genome accession   NZ_CP142018
Coordinates   1557913..1558554 (-) Length   213 a.a.
NCBI ID   WP_003052152.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain lu24     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1552913..1563554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS07795 - 1554288..1554926 (+) 639 WP_003052144.1 YigZ family protein -
  VOI49_RS07800 cysK 1555030..1555965 (+) 936 WP_003052146.1 cysteine synthase A -
  VOI49_RS07805 - 1556116..1556475 (-) 360 WP_003052148.1 S1 RNA-binding domain-containing protein -
  VOI49_RS07810 - 1556475..1557876 (-) 1402 Protein_1480 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  VOI49_RS07815 vraR 1557913..1558554 (-) 642 WP_003052152.1 response regulator transcription factor Regulator
  VOI49_RS07820 - 1558547..1559551 (-) 1005 WP_003052154.1 sensor histidine kinase -
  VOI49_RS07825 liaF 1559548..1560240 (-) 693 WP_003052156.1 cell wall-active antibiotics response protein LiaF -
  VOI49_RS07830 pknB 1560367..1562262 (-) 1896 WP_003052158.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  VOI49_RS07835 - 1562259..1562999 (-) 741 WP_003052160.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23872.53 Da        Isoelectric Point: 4.8864

>NTDB_id=839210 VOI49_RS07815 WP_003052152.1 1557913..1558554(-) (vraR) [Streptococcus dysgalactiae strain lu24]
MNNIRVILVDDHEMVRMGLKSFLNLQPDIDVIGEASNGREGVELALALKPDVLVMDLVMPELGGVEATLKILDKWKDAKI
LVLTSYLDNEKIYPVIDAGAKGYMLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILYLLA
KGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLVPQDDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=839210 VOI49_RS07815 WP_003052152.1 1557913..1558554(-) (vraR) [Streptococcus dysgalactiae strain lu24]
ATGAATAATATAAGAGTGATACTAGTGGATGATCACGAAATGGTCCGTATGGGACTTAAAAGTTTTTTGAATTTACAACC
AGATATCGATGTTATTGGCGAAGCTTCTAATGGACGTGAGGGAGTTGAGTTGGCCTTAGCCTTAAAACCAGATGTGCTGG
TTATGGATTTGGTGATGCCAGAACTAGGTGGTGTTGAGGCGACTTTGAAAATCCTCGATAAGTGGAAAGATGCCAAAATA
TTGGTCTTGACCTCTTATTTAGATAATGAGAAAATTTACCCTGTCATTGATGCTGGTGCTAAAGGTTACATGTTAAAGAC
TTCTAGTGCAGCCGAAATTTTAAATGCTATTCGGAAAGTTTCAAAAGGTGAATTGGCCATTGAAACAGAGGTAGACAAAA
AAATTAAAGCGCATGATCAACACCCTGATTTGCATGAAGAACTAACCGCGCGCGAGTATGATATTTTATATCTTTTAGCT
AAAGGGTATGATAATCAAACTATAGCGGATGAACTTTTCATCTCCTTGAAAACCGTTAAAACGCATGTATCTAATATTCT
TGCTAAGCTAGAAGTTGATGACCGAACTCAAGCTGTTGTATACGCTTTCCGACACCATTTAGTCCCCCAAGATGATAATT
AG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-202)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

51.208

97.183

0.498
  degU Bacillus subtilis subsp. subtilis str. 168

34.956

100

0.371