Detailed information NTG0839206

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QPT73_RS22315
• Genome accession: NZ_CP126619
• Coordinates: 4541748..4542548 (+)
• Length: 266 a.a.
• NCBI ID: WP_008807384.1
• Uniprot ID: A0A0J4LMF2
• Organism: Klebsiella variicola strain K3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4536748..4547548

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QPT73_RS22280 (QPT73_22270)	gspH	4536901..4537416 (+)	516	WP_008807378.1	type II secretion system minor pseudopilin GspH	-
QPT73_RS22285 (QPT73_22275)	gspI	4537413..4537778 (+)	366	WP_049139126.1	type II secretion system minor pseudopilin GspI	-
QPT73_RS22290 (QPT73_22280)	gspJ	4537775..4538371 (+)	597	WP_008807379.1	type II secretion system minor pseudopilin GspJ	-
QPT73_RS22295 (QPT73_22285)	gspK	4538368..4539348 (+)	981	WP_012542824.1	type II secretion system minor pseudopilin GspK	-
QPT73_RS22300 (QPT73_22290)	gspL	4539341..4540537 (+)	1197	WP_077139048.1	type II secretion system protein GspL	-
QPT73_RS22305 (QPT73_22295)	-	4540530..4541015 (+)	486	WP_012968921.1	type II secretion system protein M	-
QPT73_RS22310 (QPT73_22300)	-	4541005..4541751 (+)	747	WP_012968922.1	type II secretion system protein N	-
QPT73_RS22315 (QPT73_22305)	pilD	4541748..4542548 (+)	801	WP_008807384.1	A24 family peptidase	Machinery gene
QPT73_RS22320 (QPT73_22310)	hrpB	4542595..4545024 (-)	2430	WP_032740432.1	ATP-dependent helicase HrpB	-
QPT73_RS22325 (QPT73_22315)	thpR	4545097..4545633 (+)	537	WP_008807387.1	RNA 2',3'-cyclic phosphodiesterase	-
QPT73_RS22330 (QPT73_22320)	sfsA	4545633..4546349 (+)	717	WP_008807388.1	DNA/RNA nuclease SfsA	-
QPT73_RS22335 (QPT73_22325)	dksA	4546512..4546967 (+)	456	WP_007749299.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29433.14 Da
• Isoelectric Point: 8.7151

>NTDB_id=839206 QPT73_RS22315 WP_008807384.1 4541748..4542548(+) (pilD) [Klebsiella variicola strain K3]
MTTLTALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLLLLSFLLMLARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=839206 QPT73_RS22315 WP_008807384.1 4541748..4542548(+) (pilD) [Klebsiella variicola strain K3]
ATGACGACATTAACGGCATTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCCTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGCTGCTGCTCTCGTTCCTGCTGATGCTGGCGC
GGATTGACGCCCGGACCCAGCTGTTGCCCGACCGTCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCACTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCTGCGGGCTGGTGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGAGGGGGCATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

3D structure

• AlphaFold DB: A0A0J4LMF2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425