Detailed information NTG0839183

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: VOI49_RS04365
• Genome accession: NZ_CP142018
• Coordinates: 848646..849875 (+)
• Length: 409 a.a.
• NCBI ID: WP_003050340.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae strain lu24
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 843646..854875

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VOI49_RS04335	-	843713..843910 (+)	198	Protein_800	IS3 family transposase	-
VOI49_RS04340	-	844269..845546 (-)	1278	WP_003050330.1	hydroxymethylglutaryl-CoA reductase, degradative	-
VOI49_RS04345	-	845527..846708 (-)	1182	WP_003050333.1	hydroxymethylglutaryl-CoA synthase	-
VOI49_RS04350	-	846923..847762 (+)	840	WP_003050334.1	thymidylate synthase	-
VOI49_RS04355	-	847843..848340 (+)	498	WP_003050336.1	dihydrofolate reductase	-
VOI49_RS04360	-	848360..848530 (+)	171	WP_003050338.1	hypothetical protein	-
VOI49_RS04365	clpX	848646..849875 (+)	1230	WP_003050340.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
VOI49_RS04370	yihA	849885..850484 (+)	600	WP_115252820.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
VOI49_RS04375	-	850628..851371 (+)	744	WP_226313906.1	hypothetical protein	-
VOI49_RS04380	clpC	851428..853536 (-)	2109	WP_003050352.1	AAA family ATPase	Regulator
VOI49_RS04385	-	853697..854634 (-)	938	Protein_810	IS30 family transposase	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45072.60 Da
• Isoelectric Point: 4.5866

>NTDB_id=839183 VOI49_RS04365 WP_003050340.1 848646..849875(+) (clpX) [Streptococcus dysgalactiae strain lu24]
MAGNRTNDIKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEVLNQYVVGQDR
AKRALSVAVYNHYKRVSFTESRDDEDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLNTSDLIQI
LTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKAIERKTGARGLRSIIEETMLDIMFEIPSQEDVIKVRITKAAVEG
KSKPVLETA

Nucleotide

• Length: 1230 bp

>NTDB_id=839183 VOI49_RS04365 WP_003050340.1 848646..849875(+) (clpX) [Streptococcus dysgalactiae strain lu24]
ATGGCAGGAAATCGTACAAACGATATTAAAGTATATTGCTCATTTTGTGGCAAGAGCCAAGACGAAGTCAAAAAAATTAT
TGCAGGGAATAATGTTTTTATCTGTAATGAATGTGTGGCTTTGTCACAAGAAATTATTAAAGAAGAGTTGGCAGAAGAAG
TATTAGCTGATCTAACAGAAGTTCCAAAACCCAAAGAGCTCCTTGAGGTTTTAAACCAGTATGTTGTTGGCCAAGATCGT
GCCAAACGTGCTTTATCAGTAGCTGTTTACAATCATTACAAACGCGTATCATTCACGGAAAGTCGTGATGATGAAGATGT
GGAATTGCAAAAATCAAACATTTTAATGATTGGTCCAACAGGTTCAGGAAAGACTTTTCTGGCTCAAACCTTAGCTAAGA
GCTTAAATGTTCCCTTCGCGATTGCTGATGCAACCTCACTGACTGAAGCAGGGTATGTTGGAGAAGATGTGGAAAATATT
CTTCTCAAGCTTATCCAAGCAGCTGATTATAATGTGGAACGAGCAGAGCGTGGTATCATCTATGTCGATGAAATTGATAA
GATTGCTAAAAAAGGCGAAAATGTGTCCATCACACGTGATGTTTCTGGTGAGGGAGTTCAGCAGGCCTTACTAAAAATTA
TTGAAGGAACGGTTGCTAGTGTTCCTCCTCAAGGCGGTCGTAAGCATCCAAATCAGGAAATGATTCAAATTGATACCAAG
AATATCTTGTTTATTGTTGGGGGAGCCTTTGACGGCATTGAAGATATTGTCAAACAACGTTTAGGAGAAAAAGTCATTGG
TTTTGGTCAAAACAGCCGAAAAATCGACGACAATGCTTCTTATATGCAAGAGATTATTTCAGAAGATATCCAAAAATTTG
GTCTTATACCAGAGTTTATTGGACGCTTGCCAGTCGTAGCTGCTCTTGAACAACTAAACACATCAGATTTGATTCAGATT
TTGACAGAACCAAGAAATGCCCTAGTCAAGCAATATCAAGCTCTTCTTTCTTACGATGGCGTCGAATTGGCATTTGATAA
GGAAGCCTTAGAAGCCATTGCAAATAAAGCCATTGAGCGTAAGACAGGCGCGCGTGGTCTTCGTTCTATTATCGAAGAAA
CAATGTTAGACATTATGTTTGAAATTCCAAGCCAAGAAGATGTCATAAAAGTGCGTATCACCAAGGCTGCTGTCGAAGGC
AAGTCAAAACCCGTTTTAGAGACAGCGTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-388)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	89.242	100	0.892
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.603	98.044	0.575