Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   VIX88_RS04430 Genome accession   NZ_CP142016
Coordinates   896588..897760 (-) Length   390 a.a.
NCBI ID   WP_038693966.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 59RAST107     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 891588..902760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIX88_RS04415 (VIX88_04415) - 892953..894230 (-) 1278 WP_237190410.1 peroxiredoxin family protein -
  VIX88_RS04420 (VIX88_04420) - 894292..894543 (-) 252 WP_064971055.1 hypothetical protein -
  VIX88_RS04425 (VIX88_04425) - 894555..896501 (-) 1947 WP_310503733.1 T9SS type A sorting domain-containing protein -
  VIX88_RS04430 (VIX88_04430) clpX 896588..897760 (-) 1173 WP_038693966.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  VIX88_RS04435 (VIX88_04435) - 897798..898184 (-) 387 WP_064971057.1 HIT family protein -
  VIX88_RS04440 (VIX88_04440) greA 898203..898670 (-) 468 WP_064971058.1 transcription elongation factor GreA -
  VIX88_RS04445 (VIX88_04445) - 898772..899245 (+) 474 WP_064971059.1 hypothetical protein -
  VIX88_RS04450 (VIX88_04450) - 899242..900120 (-) 879 WP_127919812.1 IS982-like element ISRa1 family transposase -
  VIX88_RS04455 (VIX88_04455) dtd 900210..900465 (+) 256 Protein_882 D-aminoacyl-tRNA deacylase -
  VIX88_RS04460 (VIX88_04460) sppA 900548..902302 (-) 1755 WP_064971164.1 signal peptide peptidase SppA -
  VIX88_RS04465 (VIX88_04465) folK 902324..902749 (+) 426 WP_064971165.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -

Sequence

Protein


Download         Length: 390 a.a.        Molecular weight: 43886.49 Da        Isoelectric Point: 5.7920

>NTDB_id=839101 VIX88_RS04430 WP_038693966.1 896588..897760(-) (clpX) [Riemerella anatipestifer strain 59RAST107]
MNNNQCSFCGRHRKEVQMLVSGQNGLICEHCIEQAHAFVKDNIQKEEFSPISTLSELKKPREIKKTLDEYVIGQDQAKKQ
LSIAVYNHYKRLLHSSTKKDNDVEIEKSNIIMIGETGTGKTLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRL
LMVADYDVEKAEKGIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKYIQVNTQNILF
IAGGAFDGIKEIIERRLNKQAIGFSKEKLDSEKDLAQILPQVNSTDLRKFGLIPELLGRFPVITYLDQLTKETMVRIMKE
PKNSIVNQFKALFKIDGIDLEFTDEALEKIVDETFEKGLGARGLRGTTEKVLEDYMFDIDIISKNKITIN

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=839101 VIX88_RS04430 WP_038693966.1 896588..897760(-) (clpX) [Riemerella anatipestifer strain 59RAST107]
ATGAATAATAACCAGTGTTCTTTTTGCGGAAGACATCGTAAAGAAGTTCAAATGTTAGTTTCGGGACAAAACGGACTTAT
CTGCGAACATTGTATAGAACAAGCTCACGCATTTGTTAAAGACAATATTCAGAAAGAAGAATTCTCTCCTATAAGTACCC
TCTCCGAACTAAAGAAACCTAGAGAAATTAAAAAAACTCTAGACGAATATGTCATCGGACAAGACCAAGCTAAAAAACAA
CTTTCCATCGCAGTCTATAACCATTATAAAAGACTTCTTCACTCTTCAACAAAAAAAGACAATGATGTTGAAATAGAAAA
ATCTAACATCATTATGATAGGTGAAACAGGCACAGGAAAAACCCTTTTAGCGAAAACCATTGCAAGAGAACTTAATGTCC
CTTTTTGTATTGTAGACGCTACTATACTTACCGAAGCTGGTTATGTAGGCGAAGATGTAGAGAGTATTTTATCTAGACTT
CTTATGGTCGCTGATTACGATGTAGAGAAAGCCGAAAAAGGCATTGTATTCATAGATGAAATAGATAAAATAGCGAGAAA
ATCAGATAATCCAAGCATCACAAGAGATGTATCAGGAGAAGGTGTACAACAAGGATTATTAAAGTTATTGGAAGGAAGCA
TTGTAAATGTACCGCCTCAAGGAGGAAGAAAACACCCTGACCAAAAATACATACAAGTAAACACACAAAATATCCTATTC
ATTGCTGGAGGGGCTTTTGATGGTATAAAAGAAATTATAGAAAGGAGACTAAACAAACAAGCCATAGGCTTTAGTAAAGA
AAAACTAGATTCCGAAAAAGATTTGGCACAGATATTGCCACAAGTAAACTCAACGGATTTGAGAAAGTTCGGATTAATTC
CAGAACTTTTAGGTAGATTCCCTGTAATTACTTATTTAGACCAACTAACCAAAGAGACCATGGTAAGAATAATGAAAGAG
CCAAAAAACTCTATTGTTAATCAATTCAAAGCTCTTTTCAAAATAGACGGTATAGATTTAGAGTTCACAGACGAAGCCTT
AGAGAAAATTGTAGATGAAACTTTTGAAAAAGGATTAGGTGCAAGAGGACTTAGAGGCACTACAGAAAAGGTTTTAGAAG
ATTACATGTTTGATATAGATATAATATCCAAAAATAAAATTACAATAAATTAA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(5-40)

AAA domain (Cdc48 subfamily) (AAA_2)

(106-303)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(309-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

52.785

96.667

0.51
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.979

97.179

0.505