Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   VFH86_RS09530 Genome accession   NZ_CP142014
Coordinates   2126351..2128015 (+) Length   554 a.a.
NCBI ID   WP_000879555.1    Uniprot ID   P0C6Q4
Organism   Vibrio cholerae strain LK-18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2121351..2133015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VFH86_RS09510 (VFH86_09510) dnaK 2122418..2124325 (-) 1908 WP_000516147.1 molecular chaperone DnaK -
  VFH86_RS09515 (VFH86_09515) - 2124483..2124596 (+) 114 WP_228006377.1 transporter -
  VFH86_RS09520 (VFH86_09520) grpE 2124589..2125191 (-) 603 WP_000064037.1 nucleotide exchange factor GrpE -
  VFH86_RS09525 (VFH86_09525) nadK 2125337..2126221 (+) 885 WP_000742827.1 NAD(+) kinase -
  VFH86_RS09530 (VFH86_09530) recN 2126351..2128015 (+) 1665 WP_000879555.1 DNA repair protein RecN Machinery gene
  VFH86_RS09535 (VFH86_09535) bamE 2128174..2128533 (+) 360 WP_001160907.1 outer membrane protein assembly factor BamE -
  VFH86_RS09540 (VFH86_09540) - 2128611..2128916 (-) 306 WP_001918351.1 RnfH family protein -
  VFH86_RS09545 (VFH86_09545) - 2128919..2129353 (-) 435 WP_000815880.1 type II toxin-antitoxin system RatA family toxin -
  VFH86_RS09550 (VFH86_09550) smpB 2129537..2130022 (+) 486 WP_000162689.1 SsrA-binding protein SmpB -
  VFH86_RS09560 (VFH86_09560) - 2130817..2132178 (+) 1362 WP_000391997.1 type II toxin-antitoxin system HipA family toxin -
  VFH86_RS09565 (VFH86_09565) - 2132175..2132642 (+) 468 WP_187380393.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 554 a.a.        Molecular weight: 61251.93 Da        Isoelectric Point: 5.5765

>NTDB_id=839059 VFH86_RS09530 WP_000879555.1 2126351..2128015(+) (recN) [Vibrio cholerae strain LK-18]
MLAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRAEASMVRQGEDKTEVSAAFHLDNNLLASRWL
EDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQLKTLGQLLINVHGQHAHQQLMKPEYQLSMLDQYAGHADLLKATR
HAYQNWRQASNQLKQLRENSQQNQAQLQLLEYQIKELNELALGEDEFVELEQEQKRLANSGDLALNCQRAIELLNEGEEV
NALGLLQSVSHTLIDLAEMDSKLTALPSMVAEALIQLEETYHELRNYLDSIDVDPERMAYVEERYSKVMSLARKHHVLPE
ELYQHHQALLQQIAQLDCSDEKMSALASEVDVLYQTFVAAADKLHKSRVRYAKELDKLISQSMHELSMEKAQFKIEVQQD
SAHSSPLGFDAVTFLVSTNPGQPLQPIAKVASGGELSRMSLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKLLRKL
GESTQVLCVTHLPQVAGCGHHQLFVAKQTKAGKTETQMLKLDQEQRIAELARLLGGSQITESTLANAKELLIAA

Nucleotide


Download         Length: 1665 bp        

>NTDB_id=839059 VFH86_RS09530 WP_000879555.1 2126351..2128015(+) (recN) [Vibrio cholerae strain LK-18]
ATGCTGGCTCACTTAAGTATCAATAACTTCGCTATCGTAAAGTCACTACAACTCGAATTATCAAAAGGAATGACCACCAT
CACCGGTGAAACTGGTGCTGGTAAATCCATTGCGATTGATGCTTTAGGTTTATGTCTCGGTGGTCGAGCCGAAGCCAGCA
TGGTGCGTCAAGGTGAAGATAAAACCGAAGTCAGCGCCGCCTTTCATCTGGATAACAATCTGCTCGCCAGCCGTTGGTTA
GAAGATAATGAACTGCTTGAAGGCAAAGAGTGCATTTTGCGCCGAATCATCACCAAAGATGGGCGCTCTAAAGCCTTTAT
TAATGGCAGCCCAGTTCCGCTCTCTCAACTCAAAACGTTGGGGCAACTGCTGATCAATGTGCATGGTCAACACGCACATC
AGCAACTGATGAAACCGGAATATCAACTCAGCATGCTTGATCAATACGCAGGTCATGCAGACTTGCTCAAAGCCACGCGT
CACGCCTATCAAAATTGGCGTCAAGCGAGCAATCAGCTCAAACAGCTGCGCGAAAATAGCCAACAAAATCAGGCACAATT
ACAACTTTTGGAATACCAAATCAAAGAGCTCAACGAATTAGCTCTCGGTGAGGATGAGTTTGTCGAGCTAGAACAAGAGC
AAAAACGCTTAGCCAATAGCGGCGATCTGGCACTCAACTGCCAACGCGCGATTGAACTGCTCAATGAAGGGGAAGAAGTA
AACGCCTTAGGCCTTTTACAAAGTGTTAGCCATACGCTGATTGATCTGGCTGAAATGGATAGCAAACTGACAGCGCTCCC
TTCAATGGTGGCCGAAGCGCTGATCCAACTTGAAGAGACTTACCATGAACTGCGCAACTACTTGGATTCGATTGATGTCG
ACCCAGAACGCATGGCGTATGTAGAAGAGCGCTACTCCAAAGTCATGTCGCTCGCGCGTAAACATCATGTACTGCCAGAA
GAGCTGTATCAGCATCACCAAGCACTCTTACAGCAAATTGCTCAGCTAGATTGTTCTGATGAGAAAATGTCAGCACTCGC
GAGTGAAGTCGACGTGCTCTACCAAACGTTTGTTGCGGCCGCTGACAAACTGCACAAATCTCGTGTTCGCTATGCCAAAG
AATTGGATAAATTGATTAGCCAAAGCATGCATGAGCTGAGCATGGAAAAAGCGCAATTCAAAATCGAAGTGCAGCAAGAC
AGCGCGCACTCATCGCCATTAGGTTTTGATGCCGTGACTTTCTTAGTCTCGACGAACCCGGGTCAACCGCTGCAACCCAT
CGCCAAAGTGGCCTCTGGTGGTGAACTGTCACGGATGTCATTGGCGATCCAAGTGATTACTGCGCAGAAAGTCGATACTC
CAAGCCTGATTTTTGATGAAGTTGACGTGGGTATTTCAGGGCCAACAGCAGCCGTAGTTGGCAAACTACTGCGCAAATTG
GGCGAGTCGACTCAAGTACTGTGTGTCACCCACTTACCGCAAGTGGCAGGTTGCGGACACCATCAACTGTTTGTCGCCAA
ACAGACCAAAGCAGGCAAAACCGAAACGCAAATGCTCAAACTGGATCAAGAACAGCGCATTGCTGAACTTGCACGCTTGC
TCGGAGGCAGCCAAATTACCGAATCCACGCTCGCGAATGCTAAAGAGCTATTAATCGCAGCCTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0C6Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

36.945

100

0.375
  recN Bacillus subtilis subsp. subtilis str. 168

35.192

100

0.365