Detailed information NTG0838957

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QPJ97_RS23130
• Genome accession: NZ_CP126580
• Coordinates: 4647692..4648492 (+)
• Length: 266 a.a.
• NCBI ID: WP_094334303.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae strain FK8966
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4642692..4653492

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QPJ97_RS23095 (QPJ97_23025)	gspH	4642845..4643360 (+)	516	WP_004204416.1	type II secretion system minor pseudopilin GspH	-
QPJ97_RS23100 (QPJ97_23030)	gspI	4643357..4643722 (+)	366	WP_069734362.1	type II secretion system minor pseudopilin GspI	-
QPJ97_RS23105 (QPJ97_23035)	gspJ	4643719..4644315 (+)	597	WP_065904245.1	type II secretion system minor pseudopilin GspJ	-
QPJ97_RS23110 (QPJ97_23040)	gspK	4644312..4645292 (+)	981	WP_175936600.1	type II secretion system minor pseudopilin GspK	-
QPJ97_RS23115 (QPJ97_23045)	gspL	4645285..4646481 (+)	1197	WP_062914383.1	type II secretion system protein GspL	-
QPJ97_RS23120 (QPJ97_23050)	-	4646474..4646959 (+)	486	WP_096833520.1	type II secretion system protein M	-
QPJ97_RS23125 (QPJ97_23055)	-	4646949..4647677 (+)	729	WP_065904239.1	type II secretion system protein N	-
QPJ97_RS23130 (QPJ97_23060)	pilD	4647692..4648492 (+)	801	WP_094334303.1	A24 family peptidase	Machinery gene
QPJ97_RS23135 (QPJ97_23065)	hrpB	4648540..4650969 (-)	2430	WP_065904235.1	ATP-dependent helicase HrpB	-
QPJ97_RS23140 (QPJ97_23070)	thpR	4651042..4651578 (+)	537	WP_004204405.1	RNA 2',3'-cyclic phosphodiesterase	-
QPJ97_RS23145 (QPJ97_23075)	sfsA	4651578..4652294 (+)	717	WP_004204404.1	DNA/RNA nuclease SfsA	-
QPJ97_RS23150 (QPJ97_23080)	dksA	4652457..4652912 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29332.90 Da
• Isoelectric Point: 8.8894

>NTDB_id=838957 QPJ97_RS23130 WP_094334303.1 4647692..4648492(+) (pilD) [Klebsiella quasipneumoniae strain FK8966]
MTTLAALSLHFPLIWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLVASASGLTWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=838957 QPJ97_RS23130 WP_094334303.1 4647692..4648492(+) (pilD) [Klebsiella quasipneumoniae strain FK8966]
ATGACGACATTAGCCGCATTATCGCTGCATTTCCCTCTTATCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGACGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCCTGTCCGCAGTGTCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCGGGGGCGCTGCTCGCACCGGGACTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCGCTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTTTTGGTCGCCTCGGCCAGCGGGCTGACGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-230)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425